PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926677.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 514aa MW: 55183.5 Da PI: 6.6488

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926677.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	321	368	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010926677.1 321 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 368 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.50E-11	315	372	No hit	No description
SuperFamily	SSF47459	8.64E-17	315	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.535	317	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-17	317	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	321	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-11	323	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MNCGPPPGQL PPCILNLNWE QSMDPTSHFE SALSSIVSSP SSNSAPPEGL AVNNFVGRLG 60 SVYNSGEISP QSHYMTTPLN SPPKLNLSIM GHIGHPQPAV GSLPFSANPI PIVHLDQFSA 120 DPGFAERAAR LSCFDGRNYS AFAGQFGLPE AGKLSRSSSS QSLKATGPQT GFPERGKAIQ 180 TQERMHLEAK NAEFGNAREE SSVSDPVSAS GEVNLKGSGE NNPRKRKAAP KGKGKETASQ 240 NSAMDPPKAA AEEDSNAKRS RSAEDDGTEK ESIKPKVEQN GSGSASGDGG QKQGKENNAK 300 PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISQRMKLL QDLVPGCNKV TGKAVMLDEI 360 INYVQSLQRQ VEFLSMKLAT VNPRLDFNNV ANLFPKDMHQ TCGPVSNSVY PLETSGAALP 420 YANQPQQGAP FHCVVTNALE TESMNPLDST LYQNLGSRQP FVNGFGDASS QLGTFWEDDL 480 QSVVPVDLGQ NQEIAISSQC FHGSLPTAHM KIEL

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MNCGPPPGQL PPCILNLNWE QSMDPTSHFE SALSSIVSSP SSNSAPPEGL AVNNFVGRLG  60
SVYNSGEISP QSHYMTTPLN SPPKLNLSIM GHIGHPQPAV GSLPFSANPI PIVHLDQFSA  120
DPGFAERAAR LSCFDGRNYS AFAGQFGLPE AGKLSRSSSS QSLKATGPQT GFPERGKAIQ  180
TQERMHLEAK NAEFGNAREE SSVSDPVSAS GEVNLKGSGE NNPRKRKAAP KGKGKETASQ  240
NSAMDPPKAA AEEDSNAKRS RSAEDDGTEK ESIKPKVEQN GSGSASGDGG QKQGKENNAK  300
PPEPPKDYIH VRARRGQATD SHSLAERVRR EKISQRMKLL QDLVPGCNKV TGKAVMLDEI  360
INYVQSLQRQ VEFLSMKLAT VNPRLDFNNV ANLFPKDMHQ TCGPVSNSVY PLETSGAALP  420
YANQPQQGAP FHCVVTNALE TESMNPLDST LYQNLGSRQP FVNGFGDASS QLGTFWEDDL  480
QSVVPVDLGQ NQEIAISSQC FHGSLPTAHM KIEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019707585.1	0.0	transcription factor bHLH77
TrEMBL	A0A2H3Y3N0	0.0	A0A2H3Y3N0_PHODC; transcription factor bHLH62-like
STRING	XP_008792945.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	7e-64	bHLH family protein