PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926605.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 808aa    MW: 87517.8 Da    PI: 7.1582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926605.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.9e-19644742196
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                     f+kvl++sdv+++gr+vlpkk ae h  +++ + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ eFv++ngL+egDf++++  ++ ++
  XP_010926605.1 644 FQKVLKQSDVGSLGRIVLPKKEAEIHlpELEARDGISIPVEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNGLQEGDFIIIY--SDmKC 735
                     99*********************999**999999********7777*******99777777777777.********************..56699 PP

                     E..EEEE CS
              B3  90 felvvkv 96 
                     ++++++ 
  XP_010926605.1 736 GKYMIRG 742
                     9888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-28638751IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-22642738IPR015300DNA-binding pseudobarrel domain
CDDcd100151.72E-32642743No hitNo description
SMARTSM010191.7E-18644746IPR003340B3 DNA binding domain
PROSITE profilePS5086310.546644746IPR003340B3 DNA binding domain
PfamPF023628.3E-16644742IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MEPDGDHLHQ QQHAEAAEEA MAMAAAAATV ATSPAGAADN KDKGKRIWIP DEGPSNPPDD  60
LMLDIEGDDL IFSDAAFSCL PDFPCLPSPA RSPSSSSACN LFHNTSLASS SSSSSSFLFG  120
SDGGGSGGGD LQAVASSSNG ERMMPSEVAS DLLSMELEGL DILGDMGLFD LSEQWNPASL  180
FPDSMTMNGE ATASTSGPGP SPPLHAMAGE VRPPGEAGVG GGAARGAPVG GPEEDPEEMA  240
RVFFEWMRIN RDAISPQDLR EIRMKRATID CAVRHLGGNR QAQVQLLKLV LTWVQANHLQ  300
KKKRRRSQNE HQDRPERAAQ PPYPYHHQHQ QQPFASPNHH LPVMSSDVPV NPNPNLDYSY  360
NADSQRHGWN IPYHVDPTTG VAFPVMMPVY GGGGGSSSGG EPAYPGPAAA ANYSYHQGGT  420
SGIVLNGQPF SPSPDMHAAD HTAAAWPSQY AAAPAQYVPF GGAAGPHPAT MPQAQYPGGF  480
VNQYPGHALY QQGQRLGGMA SVTKEARKKR MARQRRVSSL HSHRSQPQQQ QQQNHHQAES  540
SSSRAPAEGA SSSSSNANNN NNNNNNNNHN NNNNNRTWSF WSSSSSSRQK NPMVETPPPP  600
KSSMQQPQLS PSMPPQQQNS HRDAASSTDR RQGLKGEKNL RFLFQKVLKQ SDVGSLGRIV  660
LPKKEAEIHL PELEARDGIS IPVEDIGTSQ VWNMRYRFWP NNKSRMYLLE NTGEFVRSNG  720
LQEGDFIIIY SDMKCGKYMI RGIKVRPQPE RGRANRSVAR SHLKRSSWER GSTSRMRGSS  780
SHDGINDDPG MPSSSAASPF MIKMEASP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-386407501111B3 domain-containing transcription factor FUS3
6j9b_D6e-386407501111B3 domain-containing transcription factor FUS3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299305QKKKRRR
2300305KKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926605.10.0regulatory protein viviparous-1 isoform X1
TrEMBLA0A3Q0HZE80.0A0A3Q0HZE8_PHODC; regulatory protein viviparous-1
STRINGXP_008787720.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.14e-64B3 family protein