PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010926548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 275aa MW: 29631.5 Da PI: 7.252 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.5 | 4.9e-31 | 33 | 87 | 3 | 56 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRre 56 + +Y+eCl+NhAa+lGgha+DGC+Efmps++++ + +++l+C ACgCHRnFHRr XP_010926548.1 33 NHQYRECLRNHAATLGGHALDGCCEFMPSPSADpAVPTSLTCDACGCHRNFHRRL 87 679******************************999*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.4E-26 | 34 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-27 | 35 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-19 | 36 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.643 | 36 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.42E-16 | 156 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-28 | 159 | 223 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.8E-25 | 164 | 220 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDSVTRSFDP GPHKPTSFPN GTLKKHLPPE DENHQYRECL RNHAATLGGH ALDGCCEFMP 60 SPSADPAVPT SLTCDACGCH RNFHRRLPPD PRIRHDETDG DEHESSEDDD DGGHRHHRSS 120 SSPPPYSSAP HMLLALSGGG GGSTQAIAAP VAASSGGFEA AAPRKRFRTK FSAEQKERMQ 180 EMSERLGWRM PKKDEVVVRE FCRQIGVERG VFKVWMHNNK HTYHGSPSSR RTGTIAAGDA 240 ATAATGRGEG NGIAAGGDNR GENNNYAVNG SPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 165 | 229 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010926548.1 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LXG0 | 1e-58 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2H3Y3D8 | 1e-107 | A0A2H3Y3D8_PHODC; zinc-finger homeodomain protein 9-like | ||||
STRING | XP_008792837.1 | 1e-108 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 5e-55 | homeobox protein 30 |
Publications ? help Back to Top | |||
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