PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010926543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 26736 Da PI: 6.6953 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.2 | 1.9e-05 | 29 | 77 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++erE+ Rd++N+ f eL +l +a + + Ka+iL A + +++L XP_010926543.1 29 KIHKSEREKLKRDQLNELFLELGHVLEPA----RQNNGKATILGDASRILRDL 77 66789*********************998....67888999999998877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-7 | 25 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.05E-10 | 25 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.32E-4 | 25 | 82 | No hit | No description |
PROSITE profile | PS50888 | 11.204 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MANEANVAAE KPVDRSLSNK KNQRRVPKKI HKSEREKLKR DQLNELFLEL GHVLEPARQN 60 NGKATILGDA SRILRDLLAH VESLRKQNAA LLTESSYVTA ERDEIRDENT ALQAEITDLQ 120 NELQARIQSG SMWANSMDMG PPTLPQPLST MPPMLQQPPV IRPVYSAPIQ ELQLFPESRT 180 APAPPTPNSN VSRPHARYPT PSDSWPGQLL SSLPRTVQEG HLSSTSSINT TSSREEGSDE 240 A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010926543.1 | 1e-175 | transcription factor BHLH062 | ||||
TrEMBL | A0A2H3XA01 | 1e-145 | A0A2H3XA01_PHODC; transcription factor BHLH062-like | ||||
STRING | XP_008780656.1 | 1e-146 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 6e-41 | bHLH family protein |