PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926532.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 525aa    MW: 55658.2 Da    PI: 4.4115
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926532.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2891.3e-881144941373
            GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd.......pmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 
                     lv+lL+ +Aea++   +  ela+ +L rl+el+sp+g        +m+Rla +ft AL+  l +s+s  +   + s++++++ + ++laa++l++
  XP_010926532.1 114 LVHLLMGAAEALAGphECRELARVILVRLNELVSPAGAtcggggtTMERLAVHFTDALQGLLDGSSSAAAGGGRQSASHRDDhTGDVLAAFQLLQ 208
                     689*********984345569***************966899999*******************888888777666666555599********** PP

            GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                     ++sP++kf+h+taNqaIleav+ ++rvHi+D+di +G+QW++L+qa+ sR+   +pp+lRiT+v +   g  + ++etg+rLa fA+++g+pf f
  XP_010926532.1 209 DMSPYVKFGHFTANQAILEAVAADRRVHIVDYDIAEGVQWASLMQAFVSREdgPQPPHLRITAVTRGGGGGVRGVQETGRRLAAFASSIGLPFAF 303
                     ***************************************************544488*********7777************************* PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsl 271
                          ++ e +++   +v +gEa++ n+vlq  +    + +  s   ++L+    l ++vv vve+e +   ++++F+ rf+  l+ ysa+ dsl
  XP_010926532.1 304 GQCRLDADERFRPGGVKVVKGEAVVANCVLQPPQGAGTRREAGS-VASFLSGAAALGARVVAVVEEEEEGleGEGDFVGRFMGELHRYSAVWDSL 397
                     **999999************************999866666666.999****************99966557999******************** PP

            GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdr 365
                     +a++p +  +r +vEr++lg++i  +v  + +         + W e++   GF+ v +s ++ +qa+lll  ++ dgyrvee+  + lvl Wk++
  XP_010926532.1 398 DAGFPIQGLARGMVERVILGPRIAGAVGRAYRG-----IGEGGWGEWMVGRGFGRVGISCFNHCQARLLLGLFN-DGYRVEEDgPNKLVLAWKSQ 486
                     ***************************988877.....7789********************************.******99568899****** PP

            GRAS 366 pLvsvSaW 373
                     +L+s+S W
  XP_010926532.1 487 RLTSASIW 494
                     ******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.13888475IPR005202Transcription factor GRAS
PfamPF035144.5E-86114494IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAVAMEEAGD LEFSGCNSNS TMDDDNGCGW TDWSPVIDWG PLSADDEFRG LIESMMCDDN  60
DNDDDEPTGL APHTSFDPYW NSNPSSTTTS VGTPPVQEPS NGGAGVEDEK GLRLVHLLMG  120
AAEALAGPHE CRELARVILV RLNELVSPAG ATCGGGGTTM ERLAVHFTDA LQGLLDGSSS  180
AAAGGGRQSA SHRDDHTGDV LAAFQLLQDM SPYVKFGHFT ANQAILEAVA ADRRVHIVDY  240
DIAEGVQWAS LMQAFVSRED GPQPPHLRIT AVTRGGGGGV RGVQETGRRL AAFASSIGLP  300
FAFGQCRLDA DERFRPGGVK VVKGEAVVAN CVLQPPQGAG TRREAGSVAS FLSGAAALGA  360
RVVAVVEEEE EGLEGEGDFV GRFMGELHRY SAVWDSLDAG FPIQGLARGM VERVILGPRI  420
AGAVGRAYRG IGEGGWGEWM VGRGFGRVGI SCFNHCQARL LLGLFNDGYR VEEDGPNKLV  480
LAWKSQRLTS ASIWSPPPPP PPFTDVLLPV PAVSNGMEDS YFFLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-4810749611379Protein SCARECROW
5b3h_D7e-4810749611379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926532.10.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE241e-155NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2H3XDW20.0A0A2H3XDW2_PHODC; nodulation-signaling pathway 2 protein-like
STRINGXP_008782233.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-88GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]