PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926495.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 347aa MW: 37577.9 Da PI: 7.3469

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926495.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.1	2.6e-30	177	232	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH rF+++++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_010926495.1 177 KARRCWSPELHCRFLHVLDQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 232 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.442	174	234	IPR017930	Myb domain
SuperFamily	SSF46689	1.3E-16	175	235	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-26	176	235	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-25	177	232	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-5	179	230	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MDFAERARRY QEYVEALEEE RRKIEVFQRE LPLCLQLVTQ AIEGIRIQIG SSEEMVTDGP 60 VLEEFIPLKP TSSSIEEEKG GLMEIEQERS EKKPDWLRSV QLWNQETDHS LPKGEPPKKP 120 IAVNAKKSSG AFHPFEREKH VPAVPAGAAA SSSTVGGGGG GGEKEKDKEG QSQPPRKARR 180 CWSPELHCRF LHVLDQLGGS HAATPKQIRE LMKVDGLTND EVKSHLQKYR LHARRPNPAV 240 QSSSAGSPPA PQFVVVGGLW VPPPDYAAAA AAQPSDGAGA SSNGVYAPVA SLPSNLRYQK 300 QQREKPSHRS PTGPLHSEGR GSGDDGATTS TSPTTSSSSQ TTASPSF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MDFAERARRY QEYVEALEEE RRKIEVFQRE LPLCLQLVTQ AIEGIRIQIG SSEEMVTDGP  60
VLEEFIPLKP TSSSIEEEKG GLMEIEQERS EKKPDWLRSV QLWNQETDHS LPKGEPPKKP  120
IAVNAKKSSG AFHPFEREKH VPAVPAGAAA SSSTVGGGGG GGEKEKDKEG QSQPPRKARR  180
CWSPELHCRF LHVLDQLGGS HAATPKQIRE LMKVDGLTND EVKSHLQKYR LHARRPNPAV  240
QSSSAGSPPA PQFVVVGGLW VPPPDYAAAA AAQPSDGAGA SSNGVYAPVA SLPSNLRYQK  300
QQREKPSHRS PTGPLHSEGR GSGDDGATTS TSPTTSSSSQ TTASPSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-14	177	230	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-14	177	230	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-14	177	230	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-14	177	230	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926495.1	0.0	transcription factor NIGT1
Swissprot	Q6Z869	2e-93	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A2H3XDY4	0.0	A0A2H3XDY4_PHODC; transcription factor NIGT1
STRING	XP_008782297.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-80	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]