PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926342.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 321aa    MW: 35361.7 Da    PI: 5.1465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926342.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13116167155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r+ h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++Y+k+L+
  XP_010926342.1 116 QRMIHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINYVKELE 167
                     6999**************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.93E-15114171No hitNo description
Gene3DG3DSA:4.10.280.109.0E-14114171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.726115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17115181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MALEAVVFPQ DTFGYYTCKE WYAMGGGAWG YDFAGVGEEE EEEKGEVLEC ESGGKGGGSW  60
DPTCSSLVQN LKEWDANPSL QKACEGTALE GEAAAAGRRK RRRAKSVKNK EEVESQRMIH  120
IAVERNRRKQ MNEYLAVLRS LMPPSYVQRG DQASIIGGAI NYVKELEQLL QSLEVQKRLK  180
QRSDATELAP PFAGFFTFPQ YSSCSSGSSH SSSSSSSSSI ANEAAAKNRS AMADIEVTMV  240
ESHANLKVLS RRRPNQLLKM VVGLQNTGLT TLHLNVTTVD QLVLYSLSLK VEDDCQFTSV  300
DEIATAVYQM LGRIQEEANF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198102RKRRR
2116127RMIHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926342.10.0transcription factor bHLH94
SwissprotQ9C7T42e-81BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2H3XDR60.0A0A2H3XDR6_PHODC; transcription factor bHLH94-like
STRINGXP_008782180.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]