PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010926342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 321aa MW: 35361.7 Da PI: 5.1465 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2.1e-13 | 116 | 167 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++Y+k+L+ XP_010926342.1 116 QRMIHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINYVKELE 167 6999**************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.93E-15 | 114 | 171 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.0E-14 | 114 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.726 | 115 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-17 | 115 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 116 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-11 | 121 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MALEAVVFPQ DTFGYYTCKE WYAMGGGAWG YDFAGVGEEE EEEKGEVLEC ESGGKGGGSW 60 DPTCSSLVQN LKEWDANPSL QKACEGTALE GEAAAAGRRK RRRAKSVKNK EEVESQRMIH 120 IAVERNRRKQ MNEYLAVLRS LMPPSYVQRG DQASIIGGAI NYVKELEQLL QSLEVQKRLK 180 QRSDATELAP PFAGFFTFPQ YSSCSSGSSH SSSSSSSSSI ANEAAAKNRS AMADIEVTMV 240 ESHANLKVLS RRRPNQLLKM VVGLQNTGLT TLHLNVTTVD QLVLYSLSLK VEDDCQFTSV 300 DEIATAVYQM LGRIQEEANF N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 102 | RKRRR |
2 | 116 | 127 | RMIHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010926342.1 | 0.0 | transcription factor bHLH94 | ||||
Swissprot | Q9C7T4 | 2e-81 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A2H3XDR6 | 0.0 | A0A2H3XDR6_PHODC; transcription factor bHLH94-like | ||||
STRING | XP_008782180.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-69 | bHLH family protein |
Publications ? help Back to Top | |||
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