PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 260aa MW: 29586.7 Da PI: 4.5045

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926338.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.8e-19	57	110	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe +++++ +++++LA+ lgL+ rqV +WFqNrRa++k XP_010926338.1 57 KKRRLSVDQVKTLEKNFEVENKLDPDRKARLAQDLGLQPRQVAIWFQNRRARWK 110 456899***********************************************9 PP
2	HD-ZIP_I/II	128.4	3e-41	56	148	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kL+p+rK++la++Lglqprqva+WFqnrRAR+ktkqlE+dy aL+++y++lk + ++L++++e+L +e+++ XP_010926338.1 56 EKKRRLSVDQVKTLEKNFEVENKLDPDRKARLAQDLGLQPRQVAIWFQNRRARWKTKQLERDYGALRTRYETLKIDCDTLRHDKEKLISEIEA 148 69*************************************************************************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.989	52	112	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-19	52	114	IPR009057	Homeodomain-like
SMART	SM00389	6.6E-19	55	116	IPR001356	Homeobox domain
CDD	cd00086	1.27E-16	57	113	No hit	No description
Pfam	PF00046	1.1E-16	57	110	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.3E-20	59	119	IPR009057	Homeodomain-like
PRINTS	PR00031	6.8E-6	83	92	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.8E-6	92	108	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.0E-16	112	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MTKHSSSDSF GSLQEKETVQ EKGKYEDRFQ SMMDGAEEVE CEEEELCSNG QSALGEKKRR 60 LSVDQVKTLE KNFEVENKLD PDRKARLAQD LGLQPRQVAI WFQNRRARWK TKQLERDYGA 120 LRTRYETLKI DCDTLRHDKE KLISEIEALK AKLTNSATIT ILENKEAEER PALIYRDGAS 180 DSDSSVVFND ENSPYSGVVL DQDYFAGFKS YSSSSPSLFE SRALGQKDYL AEGFLSGEEL 240 CSALFSEEQE ASLSWYCSEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	87	DRKARLA
2	104	112	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926338.1	0.0	homeobox-leucine zipper protein HOX8
Swissprot	Q338Z7	5e-55	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
Swissprot	Q6V9S9	3e-55	HOX8_ORYSI; Homeobox-leucine zipper protein HOX8
TrEMBL	A0A2H3XDH8	1e-149	A0A2H3XDH8_PHODC; homeobox-leucine zipper protein HOX13-like
STRING	XP_008782176.1	1e-150	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	3e-55	homeobox protein 16

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]