PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926094.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HSF

Protein Properties

Length: 378aa MW: 42519.9 Da PI: 6.0598

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926094.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	105.7	3.8e-33	20	112	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k ye+++d++++ ++sws+++nsfv++d+ +f +++LpkyFkhsn++SFvRQLn+YgF+kv+ ++ eF+++ F +g+k+ll++ XP_010926094.1 20 FLSKCYEMVDDPQTDGTVSWSKTNNSFVIWDPASFCRDLLPKYFKHSNLSSFVRQLNTYGFRKVDPDR---------YEFANEGFLRGQKDLLKT 105 9***************************************************************99.........78************ PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i rkk + XP_010926094.1 106 IIRKKPS 112 *9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.5E-55	16	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	5.2E-36	17	104	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.75E-33	17	109	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.9E-29	20	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-19	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-19	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	59	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.5E-19	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEVEKGGGGG SSLVPVVPPF LSKCYEMVDD PQTDGTVSWS KTNNSFVIWD PASFCRDLLP 60 KYFKHSNLSS FVRQLNTYGF RKVDPDRYEF ANEGFLRGQK DLLKTIIRKK PSHNSGQQHQ 120 SDGRNSSVNA CVEVGKFGPK EEIEMLKRDK NVLMQELVKL RQHQQNTDHE LVILRQRVQG 180 MEQHQQQMMS FLAMVVKSPG FLAQLMQQSG NNRWTEANKK RRLPALEQGV VGGSQTSSDG 240 QIIRYQPFVP ETLRPSMSPV PNADVSPDLQ HMSNGVNDLC TNGDVMSLGA NSSLPPGGDL 300 PPMEYFERLL ASSISENDGQ TEPWSPEVPD FMWDFVLPEQ EFQMETSQNM VLPSEQVGGN 360 HQASAKDDRH TFLNMKAR

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEVEKGGGGG SSLVPVVPPF LSKCYEMVDD PQTDGTVSWS KTNNSFVIWD PASFCRDLLP  60
KYFKHSNLSS FVRQLNTYGF RKVDPDRYEF ANEGFLRGQK DLLKTIIRKK PSHNSGQQHQ  120
SDGRNSSVNA CVEVGKFGPK EEIEMLKRDK NVLMQELVKL RQHQQNTDHE LVILRQRVQG  180
MEQHQQQMMS FLAMVVKSPG FLAQLMQQSG NNRWTEANKK RRLPALEQGV VGGSQTSSDG  240
QIIRYQPFVP ETLRPSMSPV PNADVSPDLQ HMSNGVNDLC TNGDVMSLGA NSSLPPGGDL  300
PPMEYFERLL ASSISENDGQ TEPWSPEVPD FMWDFVLPEQ EFQMETSQNM VLPSEQVGGN  360
HQASAKDDRH TFLNMKAR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-26	17	112	17	123	Heat shock factor protein 1
5d5u_B	1e-26	17	109	26	129	Heat shock factor protein 1
5d5v_B	1e-26	17	109	26	129	Heat shock factor protein 1
5d5v_D	1e-26	17	109	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926094.2	0.0	heat stress transcription factor A-1 isoform X1
Refseq	XP_019707190.1	0.0	heat stress transcription factor A-1 isoform X1
Refseq	XP_019707191.1	0.0	heat stress transcription factor A-1 isoform X2
Swissprot	Q84T61	1e-107	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2H3ZE52	0.0	A0A2H3ZE52_PHODC; heat stress transcription factor A-1-like
STRING	XP_008812463.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	6e-97	heat shock transcription factor A1D

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]