PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010926028.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 281aa    MW: 31163 Da    PI: 5.2646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010926028.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08174221455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L++l+P +     k +  a +L + ++Y++sLq
  XP_010926028.1 174 SHSLAERVRREKINERMRCLQDLVPGC----YKAMGMAGMLDEIINYVQSLQ 221
                     8*************************8....355999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.54E-10168225No hitNo description
SuperFamilySSF474592.09E-16168237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16170232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-9176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEDSKSQYMA EFLESFSCLK PSLSLMEIDS SLELMGQFPE LNGTALEYYS SMGLTGFSSE  60
NYSSLQPEFS VPLADNLSSF LPLECAKPIS VSRPGTFDGE RSPAGGKKRK ERAAPETSST  120
NSSEPPTESL LRDDKSKKKN ISGNAKRGRN NSKEVEKPGE VVHVRARRGQ ATDSHSLAER  180
VRREKINERM RCLQDLVPGC YKAMGMAGML DEIINYVQSL QNQVEFLSMK LSAASSFYDY  240
NLDLEATATP QVLNACEAHD VDRVLREGYG CCTTFHSTMP F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926028.10.0transcription factor bHLH75
TrEMBLA0A2H3Z2701e-166A0A2H3Z270_PHODC; transcription factor bHLH75-like
STRINGXP_008807118.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15639615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.17e-57bHLH family protein