PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925976.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 384aa MW: 43193.1 Da PI: 5.2018

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925976.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	5.9e-10	193	239	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i ++++ L++l+P + +k Ka++L + ++Y++sLq XP_010925976.1 193 HSLAERVRREKISERMNFLQDLVPGC----NKITGKASMLDEIINYVQSLQ 239 999*********************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-17	186	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-10	186	243	No hit	No description
PROSITE profile	PS50888	15.751	188	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-17	189	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-7	193	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-9	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MLNMLQRRPV HETNTNMATS DRSLLDRLKW QQPQQDSYFT LSNRCHANDS YLLASSIDQA 60 NHTTTISSYE EEEEEENKQQ LNNHCTILGS SSLQTECTRA SKKRKADRFH SGKVGCTGDG 120 MEGSTKEKIS IKGDKGGGVP VARPEVENQQ RSNNNNEKKE ASGESSKDNS KALAPMQDYI 180 HVRARRGQAT DRHSLAERVR REKISERMNF LQDLVPGCNK ITGKASMLDE IINYVQSLQK 240 QVEFLSMKLA SVNPSLEFNT DEFFSKEIDP VPSTICPPAG MPCEPVDASY LPFDNLEQAV 300 ARGGLDMALD NSELALRRTM SAPAAVPEAF MDSCFSVNGS FVAWDSDMRS CCDMVMHQGL 360 EFPLVDLRSH DDDHQEWLHE YHYL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MLNMLQRRPV HETNTNMATS DRSLLDRLKW QQPQQDSYFT LSNRCHANDS YLLASSIDQA  60
NHTTTISSYE EEEEEENKQQ LNNHCTILGS SSLQTECTRA SKKRKADRFH SGKVGCTGDG  120
MEGSTKEKIS IKGDKGGGVP VARPEVENQQ RSNNNNEKKE ASGESSKDNS KALAPMQDYI  180
HVRARRGQAT DRHSLAERVR REKISERMNF LQDLVPGCNK ITGKASMLDE IINYVQSLQK  240
QVEFLSMKLA SVNPSLEFNT DEFFSKEIDP VPSTICPPAG MPCEPVDASY LPFDNLEQAV  300
ARGGLDMALD NSELALRRTM SAPAAVPEAF MDSCFSVNGS FVAWDSDMRS CCDMVMHQGL  360
EFPLVDLRSH DDDHQEWLHE YHYL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925976.1	0.0	transcription factor bHLH63 isoform X1
TrEMBL	A0A3Q0IL35	1e-151	A0A3Q0IL35_PHODC; transcription factor HBI1-like
STRING	XP_008810718.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50816	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	5e-52	cryptochrome-interacting basic-helix-loop-helix 1