PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925897.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 343aa MW: 37259.4 Da PI: 6.7081

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925897.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00043	210	248	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_010925897.1 210 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 248 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.935	198	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-10	208	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.43E-6	208	252	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-7	212	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MNRGVFQSSL VQQMMGGSPS WRGMNNMRPP PDQTSPLLPS ASSSSSSSVF PQYHQPSNFL 60 PMPSWHDNQE LPESWSQLLL GGLVGEEERC SFTTFQPKKT ENWDDQMVYP SASAYMIDVK 120 QESSEGGYAY GHGNGDIHAS KSLLVPVSSP ISCVTTSFSS NMLDFSNSKG ERRHHQSDQS 180 SECNSTATGA AFKKARVQGP SSAQSTFKVR KEKLGDRITA LHQLVSPFGK TDTASVLLEA 240 IGYIRFLQSQ IEALSSPYLG GGSGNVRQPA QGERSCIFPE DPGQLLNDNC TKKRGPPEQD 300 ANDEPKKDLR SRGLCLVPVS CTLHVGSDNG ADYWAPSLGG GFR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MNRGVFQSSL VQQMMGGSPS WRGMNNMRPP PDQTSPLLPS ASSSSSSSVF PQYHQPSNFL  60
PMPSWHDNQE LPESWSQLLL GGLVGEEERC SFTTFQPKKT ENWDDQMVYP SASAYMIDVK  120
QESSEGGYAY GHGNGDIHAS KSLLVPVSSP ISCVTTSFSS NMLDFSNSKG ERRHHQSDQS  180
SECNSTATGA AFKKARVQGP SSAQSTFKVR KEKLGDRITA LHQLVSPFGK TDTASVLLEA  240
IGYIRFLQSQ IEALSSPYLG GGSGNVRQPA QGERSCIFPE DPGQLLNDNC TKKRGPPEQD  300
ANDEPKKDLR SRGLCLVPVS CTLHVGSDNG ADYWAPSLGG GFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925897.1	0.0	transcription factor bHLH68
Swissprot	Q8S3D1	1e-89	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2H3XG12	0.0	A0A2H3XG12_PHODC; transcription factor bHLH68-like
STRING	XP_008783244.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2167	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-83	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]