PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 37259.4 Da PI: 6.7081 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00043 | 210 | 248 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_010925897.1 210 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 248 6678889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.935 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-10 | 208 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.43E-6 | 208 | 252 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-7 | 212 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MNRGVFQSSL VQQMMGGSPS WRGMNNMRPP PDQTSPLLPS ASSSSSSSVF PQYHQPSNFL 60 PMPSWHDNQE LPESWSQLLL GGLVGEEERC SFTTFQPKKT ENWDDQMVYP SASAYMIDVK 120 QESSEGGYAY GHGNGDIHAS KSLLVPVSSP ISCVTTSFSS NMLDFSNSKG ERRHHQSDQS 180 SECNSTATGA AFKKARVQGP SSAQSTFKVR KEKLGDRITA LHQLVSPFGK TDTASVLLEA 240 IGYIRFLQSQ IEALSSPYLG GGSGNVRQPA QGERSCIFPE DPGQLLNDNC TKKRGPPEQD 300 ANDEPKKDLR SRGLCLVPVS CTLHVGSDNG ADYWAPSLGG GFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925897.1 | 0.0 | transcription factor bHLH68 | ||||
Swissprot | Q8S3D1 | 1e-89 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A2H3XG12 | 0.0 | A0A2H3XG12_PHODC; transcription factor bHLH68-like | ||||
STRING | XP_008783244.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2167 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 4e-83 | bHLH family protein |
Publications ? help Back to Top | |||
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