PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925876.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CPP
Protein Properties Length: 532aa    MW: 58354.6 Da    PI: 6.4233
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925876.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.62.5e-1380119242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  XP_010925876.1  80 KQKQCNCKNSRCLKLYCECFASGLYCDG-CNCVNCCNNVEN 119
                     89**************************.********9875 PP
2TCR51.61.9e-16164203140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  XP_010925876.1 164 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCIDCKNYE 203
                     589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.2E-1479119IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.9680204IPR005172CRC domain
PfamPF036388.7E-1081116IPR005172CRC domain
SMARTSM011141.5E-20164205IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.7E-13167202IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEQGIKSAAP IPSDFPPKKL ARQLDFTAAH CESAGAGALE QQSPLPLPVS RPSIQTSVKL  60
GSPRSRPLPI FEAKDGTPKK QKQCNCKNSR CLKLYCECFA SGLYCDGCNC VNCCNNVENE  120
AARQEAVEAT LERNPNAFRP KIDNSPHANR DSREEAGEPP LVGKHNKGCH CKKSGCLKKY  180
CECFQANILC SDNCKCIDCK NYEGSEERRA LFHSEQGISH SYIQQAANAA LNGAIGSSGF  240
GSPPAFKKRK TQELFLPPTV KDQSILRLQQ FPQANHIKTC APASSFASTT VAHAINPIQA  300
GSWKVTYRSP LVDIVQPEDV KELCKLLIMV SREAAKTFAD QKACEENPAH AEDQTDCSLA  360
SWNQDMDASQ REPDVQKEPV DDCSNGTDMD RANVELSESD HVDVHEGSKP MSPGTLALMC  420
DEQDTIFMTF QNNSTSSRFL SNQNVSEVYV EQERCVLMGL RDRLRWLINC GKIKEAQYSS  480
MAMKFETSNL QDSVNNAPIL SSSDANRPMN SVPASANYSP PPKGQQSIAN GD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-31722132132Protein lin-54 homolog
5fd3_B1e-31722132132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925876.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-151TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2H3YMN40.0A0A2H3YMN4_PHODC; protein tesmin/TSO1-like CXC 5
STRINGXP_008800911.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-141Tesmin/TSO1-like CXC domain-containing protein