 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_010925740.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
Family |
C3H |
Protein Properties |
Length: 418aa MW: 46776.3 Da PI: 7.0999 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_010925740.1 | genome | OG | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 36.3 | 9.7e-12 | 194 | 219 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd CkF H+
XP_010925740.1 194 YQPDICKDYKETGYCGYGDACKFLHD 219
66789********************7 PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 4.45E-9 | 192 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-7 | 193 | 220 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 193 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-12 | 194 | 224 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 194 | 219 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 7.7E-13 | 264 | 318 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 1.4E-7 | 270 | 311 | No hit | No description |
SuperFamily | SSF57850 | 6.18E-13 | 270 | 314 | No hit | No description |
SMART | SM00184 | 1.3E-4 | 271 | 308 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.542 | 271 | 309 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 2.68E-7 | 271 | 312 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 286 | 295 | IPR017907 | Zinc finger, RING-type, conserved site |
Sequence ? help Back to Top |
Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MADSGEVCNF FRKPIKNKNI RKRKAAESSD DDNDEEGSQP SSAVAQRSKK PVPADNKLHF 60 STARSSSKTY GDATGDDDDE GDEAAGGRAS ALFHFESSKE IQVQHDSLAT ATLETETEFS 120 KDARAIRERV LKQAEEALKG KSKGNDKVYR GIHGYTDYKA GFRREQTVAG EKAGGAHGPL 180 RPSSNIRLSA RFDYQPDICK DYKETGYCGY GDACKFLHDR GDYKSGWQLE KEWEEVEKAR 240 KRGLALGGGG TEGDGGDDED DDDDDSLPFA CFICRQPFEE PVVTKCKHYF CQHCALKHHA 300 TNKKCFVCNK PTLGIFNTAH EIRKKMAQEK YECRRPCILM RSGIWRLLWG CSKIWCSRLW 360 LGHPTQPIAR DVKVTCGDLI QSTPISTLAL ILYYVEHDFV AALQPPPRPT VQEDKNVS
|