 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010925578.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
| Family |
DBB |
| Protein Properties |
Length: 296aa MW: 31961.9 Da PI: 6.1162 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010925578.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 19.5 | 2.1e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
C+ +e e++ C ++ lC +C ++ H H++vpl
XP_010925578.1 4 QCNACEVAEATVLCCADEAALCWSCDEKVHAAnklagkHQRVPL 47
7******99*********************66899999999986 PP
|
| 2 | zf-B_box | 28.8 | 2.6e-09 | 56 | 92 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
+kC+ ++e +fC +++ llC++C +++H H
XP_010925578.1 56 VPKCDICQEASGYFFCLEDRALLCRKCDVAIHTAnpH 92
689****************************955663 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0010099 | Biological Process | regulation of photomorphogenesis |
| GO:0015995 | Biological Process | chlorophyll biosynthetic process |
| GO:0016607 | Cellular Component | nuclear speck |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MKIQCNACEV AEATVLCCAD EAALCWSCDE KVHAANKLAG KHQRVPLLSG GSSPRVPKCD 60
ICQEASGYFF CLEDRALLCR KCDVAIHTAN PHVSAHQRFL VTGVQVGLEP TEPLASFANE 120
QLNSSGKTVE WPTKSLPKRS HSMSLSSETN EVFSSQVGKD EGLAASKMSF SGVTMPGNIP 180
HWSLDELFGF TDFSQDFGFM EHGSSKADSA KLGSSEGSPL CRSADEELDA GNCLGQVPEI 240
PWTVPEIPSP PTASGLHWQR NLHYPASDHA AFVPDIYSTR GPRTSSAIGS KRYRLC
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
