PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HSF | ||||||||
Protein Properties | Length: 135aa MW: 15606.2 Da PI: 6.9774 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.9 | 9e-35 | 16 | 107 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F+ k+y++++d++++ +isw +++nsfvv d+ f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+sF +g+++ll++ XP_010925572.1 16 FVLKTYRMVNDPATDPMISWGKDNNSFVVGDPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHSSFLRGQTHLLRR 101 9****************************************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r++s XP_010925572.1 102 IVRRSS 107 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.8E-52 | 12 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.93E-35 | 14 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.0E-38 | 14 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.2E-18 | 16 | 39 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-30 | 16 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 54 | 66 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 55 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MEDGSGNGSA LVAAPFVLKT YRMVNDPATD PMISWGKDNN SFVVGDPFVF SQTLLPAHFK 60 HNNFSSFVRQ LNTYGFRKVD PDRWEFAHSS FLRGQTHLLR RIVRRSSGNS KEAEAEEEEE 120 EEEEEGEGRR RRRRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-24 | 16 | 110 | 20 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 134 | RRRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008794137.1 | 1e-67 | heat stress transcription factor C-2b-like | ||||
Swissprot | Q6EUG4 | 8e-58 | HFC2A_ORYSJ; Heat stress transcription factor C-2a | ||||
TrEMBL | A0A2H3Y716 | 3e-66 | A0A2H3Y716_PHODC; heat stress transcription factor C-2b-like | ||||
STRING | XP_008794137.1 | 5e-67 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4471 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-47 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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