PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010925568.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 178aa MW: 19736.8 Da PI: 9.9804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925568.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	12	63	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +E++RR +++ ++L +llP+ + + + l + L +Av+YIk Lq XP_010925568.1 12 RKTVEKNRRIQMKALCSKLESLLPSsPNSREGVTLPLPDRLDEAVNYIKGLQ 63 5789*******************665777777***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.563	7	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-10	9	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-9	12	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-6	13	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MESSHGLTRP DRKTVEKNRR IQMKALCSKL ESLLPSSPNS REGVTLPLPD RLDEAVNYIK 60 GLQGRLERMK ERKRQLMGSE RRSRGMGSEV GGGMRVPQIE VQDLGPALRV VLISSPVDRL 120 LFYEAIRVLE EEGGAVLNAN FSVVGDNAFH IIHSMVADPR GGSEATKVLE RLKMACSQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925568.1	1e-126	transcription factor bHLH162
TrEMBL	A0A2H3Y710	1e-106	A0A2H3Y710_PHODC; transcription factor bHLH162-like
STRING	XP_008794132.1	1e-107	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11987	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-35	bHLH family protein