PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB

Protein Properties

Length: 339aa MW: 37090.2 Da PI: 9.4217

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925547.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.7e-16	44	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEde l++ v++ G g+W+t +++ g+ R++k+c++rw +yl XP_010925547.1 44 RGPWTREEDEVLAKFVRKEGEGRWRTLPHRAGLLRCGKSCRLRWMNYL 91 89****************************99**********97 PP
2	Myb_DNA-binding	47.6	4e-15	97	142	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_010925547.1 97 RGPIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 142 566679**************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.406	39	91	IPR017930	Myb domain
SuperFamily	SSF46689	9.17E-29	41	138	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-12	43	93	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-14	44	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-21	45	98	IPR009057	Homeodomain-like
CDD	cd00167	2.06E-10	46	91	No hit	No description
PROSITE profile	PS51294	25.164	92	146	IPR017930	Myb domain
SMART	SM00717	2.7E-14	96	144	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-14	98	142	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-24	99	147	IPR009057	Homeodomain-like
CDD	cd00167	1.20E-11	102	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MRNPSSTSGP GPSSSLSSPA TGSRSVTKQR QKGAPTASKM GVKRGPWTRE EDEVLAKFVR 60 KEGEGRWRTL PHRAGLLRCG KSCRLRWMNY LRPSIKRGPI APDEEDLILR LHRLLGNRWS 120 LIAGRIPGRT DNEIKNYWNT HLSKKLISQG IDPRTHKPLT SSSSPNPDPP LPEGPKIFQP 180 PARIPYRNPN PNPNANPGST IPSVHQQMSG GHGGVGTHRG RDGFSGSVSL EQDDGWQNME 240 GFPAMDLQGS QGEGDTGEDD VLSSFLDSLI NDDIFLQNPQ QNVNYNDDDN FNNGQIQSHD 300 PRMSSAPGFG VGTLGESTLT SPVIQDKETH GKFVDHAGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	7e-26	44	146	4	105	C-Myb DNA-Binding Domain
1msf_C	7e-26	44	146	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925547.1	0.0	transcription repressor MYB5
Swissprot	Q38850	4e-78	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A2H3Y0H2	1e-167	A0A2H3Y0H2_PHODC; transcription repressor MYB5-like
STRING	XP_008791485.1	1e-168	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-75	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]