PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925492.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 469aa    MW: 52432.9 Da    PI: 6.3001
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925492.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62e-083954321954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  XP_010925492.1 395 FHNflHPYPKDNEKHLLAIKSGLTRSQVSNWFINARVR 432
                     776679******************************88 PP
2BELL67.33e-22267336372
            BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     qe+  kk+ L ++l+ Vd+rY+q+ eq++ vis F  +++ g++++++ +Al+ai   +++L+++i++qi
  XP_010925492.1 267 QEVYTKKTELATMLHLVDQRYNQCIEQIHNVISTFYSATESGTSHMHALFALRAIFSLYKNLRERITSQI 336
                     68889****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-9183334IPR006563POX domain
PfamPF075262.6E-26191333IPR006563POX domain
PROSITE profilePS5007111.386373436IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-26375449IPR009057Homeodomain-like
SuperFamilySSF466892.95E-15376444IPR009057Homeodomain-like
SMARTSM003893.5E-5376440IPR001356Homeobox domain
CDDcd000864.53E-11376437No hitNo description
PfamPF059204.0E-14393432IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVVESAFPHM FSDPVIQLSF PGYNNHRQIM ASDPFLSTFQ EAQEEALSNL YVANNGDMVN  60
GNVPYSRNMP HVGNVSYDGS SGNADLGEHF MGTSLPATSL VNLVSGTTCL RENLISVDAA  120
STSSLPSKEM RTSISSDCCN TINSSKTVSV NCEFELQDDA GLLTSKKDAC LNQQLNCSWN  180
YDVLGPEVPS GSRYLHVMQQ ILAEVATYAV ADSNEMNSDS FGGIGGEEKM TFSSGCSNLR  240
ELAMSDEFPF SSGEIKSQGH VDGQRCQEVY TKKTELATML HLVDQRYNQC IEQIHNVIST  300
FYSATESGTS HMHALFALRA IFSLYKNLRE RITSQILVIA QQCSTLCMRE EKSFGSSLIQ  360
KQLALQQLRS HHQQSWRPQR GLPEKSVSVL RAWMFHNFLH PYPKDNEKHL LAIKSGLTRS  420
QVSNWFINAR VRLWKPMIEE MYSELKRKNQ PEGSDGESRV HGNIGSQWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-14382440563Homeobox protein Meis2
3k2a_B3e-14382440563Homeobox protein Meis2
4xrm_A3e-14382440563Homeobox protein Meis2
4xrm_B3e-14382440563Homeobox protein Meis2
5bng_A3e-14382440159Homeobox protein Meis2
5bng_B3e-14382440159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010915336.10.0BEL1-like homeodomain protein 3 isoform X3
SwissprotP487312e-73ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2H4A0470.0A0A2H4A047_PHODC; homeobox protein ATH1-like
STRINGXP_008811733.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.19e-76homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]