PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925444.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 19963.3 Da PI: 10.0901 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.7e-07 | 13 | 62 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 + +E++RR +++ ++L +l+Pk+ + sk l+ + L +A Y+k+L XP_010925444.1 13 KTVEKNRRLYMKNLCFKLASLIPKDQYTISKDtLTQEDQLDQAASYVKKL 62 689*********************655666666***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.715 | 7 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-8 | 9 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-9 | 11 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MKTCGRATKL ERKTVEKNRR LYMKNLCFKL ASLIPKDQYT ISKDTLTQED QLDQAASYVK 60 KLKERVERLK QRKEMALRSR GPDNISGRVL SSFSLPVIDV RHLDSTLEVF IVSGLSKGII 120 FRDVLCVLEE EGAEAINASF SIAGDKIFCT IHSQAISSRI GFEAPRVCER LKRLVL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925444.1 | 1e-126 | transcription factor bHLH162 | ||||
TrEMBL | A0A2H3XEA2 | 2e-68 | A0A2H3XEA2_PHODC; transcription factor bHLH167-like | ||||
STRING | XP_008801995.1 | 1e-69 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 9e-27 | bHLH family protein |