PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_010925294.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 812aa MW: 93127.8 Da PI: 6.8892

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010925294.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.5	9.1e-23	70	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA+++GF +++++s +s ++g++ k tf+C kegkr +++++ ++ r r + rt+C+ak+kv+k++ dg +++t+++leHnH+++ XP_010925294.1 70 DFYNQYARRTGFGTKIRRSWYSLEDGQCNKVTFTCCKEGKRVYKNSERCSSYRLRLSARTDCQAKIKVQKRYaDGLFHLTEVVLEHNHPVN 160 6********************************************999************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-19	70	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-30	265	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.841	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.6E-6	554	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-5	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MADESGDAAE VPPEKDLEVV SMGEPNAGKQ ACEPESLPEP EPGGDQKTTG ADEGVPLVGM 60 VFKTFEEVYD FYNQYARRTG FGTKIRRSWY SLEDGQCNKV TFTCCKEGKR VYKNSERCSS 120 YRLRLSARTD CQAKIKVQKR YADGLFHLTE VVLEHNHPVN PAMSKYFRSH KDIYDGMKRQ 180 PMMRAKGQRE VASGENEDEC SAGKARSSSF LGREDVEALQ QFLIQLQTTN ANFFHLMDLD 240 AEGRVRNVFW ADGRSRAAYQ YFGDVIAFDT SYLTGNFETA LASFVGVNHH GHLVLLGCAL 300 LSNRSSATYR WLFKAWLSCM SGIPPNAIIT DHCKAIQEAV VEVFPGARHR LCLWHVMKRM 360 QEYLGGHAEY KAIKGTMKKA VYDSLEIDEF EEVWKNMIEK YGLKEHEWLK SLYENRYCWV 420 PVFVKDTFWA GMSTTQHKES MTSFFDGYIY PKTSIKQFLC KYETATQSKY EKEIQADLDS 480 FSKSPQLISK FYMEDQLRKI YTVDMFKKFQ EEVKAILYCI PSLVRVDGSV STFEVKEPIQ 540 TKDGNMMENR NYEVSYNSQE QDLRCICCSF QFRGILCRHA LSVLNFLEVY EIPSQFILER 600 WRKDYKHIHI LPSSNDSLAN GPMERYNNIY KFCLKFAEVG AIVDDNYEAV MKILSEGMEE 660 LIASDCLISD PELRTYTMNG KRSLINENDE IHDQVQVRRK GQPLKKRKES LVEKIVKTSK 720 KKVSQRKPPV GGQSDILRIA PDTPQFDTPI WAQETISLAE QVNPTNLSIG SHFGVPVNHQ 780 HAIDNQSGMR WSFQQMFQQA HTQEAPPGPW AG

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MADESGDAAE VPPEKDLEVV SMGEPNAGKQ ACEPESLPEP EPGGDQKTTG ADEGVPLVGM  60
VFKTFEEVYD FYNQYARRTG FGTKIRRSWY SLEDGQCNKV TFTCCKEGKR VYKNSERCSS  120
YRLRLSARTD CQAKIKVQKR YADGLFHLTE VVLEHNHPVN PAMSKYFRSH KDIYDGMKRQ  180
PMMRAKGQRE VASGENEDEC SAGKARSSSF LGREDVEALQ QFLIQLQTTN ANFFHLMDLD  240
AEGRVRNVFW ADGRSRAAYQ YFGDVIAFDT SYLTGNFETA LASFVGVNHH GHLVLLGCAL  300
LSNRSSATYR WLFKAWLSCM SGIPPNAIIT DHCKAIQEAV VEVFPGARHR LCLWHVMKRM  360
QEYLGGHAEY KAIKGTMKKA VYDSLEIDEF EEVWKNMIEK YGLKEHEWLK SLYENRYCWV  420
PVFVKDTFWA GMSTTQHKES MTSFFDGYIY PKTSIKQFLC KYETATQSKY EKEIQADLDS  480
FSKSPQLISK FYMEDQLRKI YTVDMFKKFQ EEVKAILYCI PSLVRVDGSV STFEVKEPIQ  540
TKDGNMMENR NYEVSYNSQE QDLRCICCSF QFRGILCRHA LSVLNFLEVY EIPSQFILER  600
WRKDYKHIHI LPSSNDSLAN GPMERYNNIY KFCLKFAEVG AIVDDNYEAV MKILSEGMEE  660
LIASDCLISD PELRTYTMNG KRSLINENDE IHDQVQVRRK GQPLKKRKES LVEKIVKTSK  720
KKVSQRKPPV GGQSDILRIA PDTPQFDTPI WAQETISLAE QVNPTNLSIG SHFGVPVNHQ  780
HAIDNQSGMR WSFQQMFQQA HTQEAPPGPW AG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925293.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2I0B6L0	0.0	A0A2I0B6L0_9ASPA; Protein FAR1-like sequence 6
STRING	XP_008785831.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-145	FAR1-related sequence 6