PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924964.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 415aa MW: 45777.8 Da PI: 4.7919

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924964.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.8e-07	335	375	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P K++ a++L +A Y+k L XP_010924964.1 335 ARLRRERISEKLRVLQSLVPGG-----SKMDTASMLDEAASYLKFL 375 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.748	326	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	332	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-14	332	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.57E-10	332	380	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.8E-11	335	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MDSWSWNINS TNLASDISSI PSCLWSNLYD TFSESNEDYS NISEKVEQDQ ALFTSGLELQ 60 GLQTSEMSSN FDGVNELVEM LAPALDSINN NLDLEFLQRQ QVIRLAANSV LEKSRIFGAT 120 WGDALSSQLC SLPPITESKA ADPFDSLTET IGSSEELRVL SDLTNDECGL SAIFSSSENI 180 HNLSYSGNIS SGESEIHGSF DHHRSNRGEV ASVSQASSNP HQAQLSFSNP DQTQAEQAKD 240 KPIITKRKME EAGIQISFRN DPRPKKSRSE KQPRSSSINF GHESGYEPDT EAIAQVKEMI 300 YRAAALRPVN LGVEAVEKPK RKNVRISSDP QTVAARLRRE RISEKLRVLQ SLVPGGSKMD 360 TASMLDEAAS YLKFLKSQVK FLETQGSRFD TMSSATLPFP APFNQTFSVH SLPPP

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MDSWSWNINS TNLASDISSI PSCLWSNLYD TFSESNEDYS NISEKVEQDQ ALFTSGLELQ  60
GLQTSEMSSN FDGVNELVEM LAPALDSINN NLDLEFLQRQ QVIRLAANSV LEKSRIFGAT  120
WGDALSSQLC SLPPITESKA ADPFDSLTET IGSSEELRVL SDLTNDECGL SAIFSSSENI  180
HNLSYSGNIS SGESEIHGSF DHHRSNRGEV ASVSQASSNP HQAQLSFSNP DQTQAEQAKD  240
KPIITKRKME EAGIQISFRN DPRPKKSRSE KQPRSSSINF GHESGYEPDT EAIAQVKEMI  300
YRAAALRPVN LGVEAVEKPK RKNVRISSDP QTVAARLRRE RISEKLRVLQ SLVPGGSKMD  360
TASMLDEAAS YLKFLKSQVK FLETQGSRFD TMSSATLPFP APFNQTFSVH SLPPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	340	RLRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924964.1	0.0	transcription factor bHLH87-like
TrEMBL	A0A2H3Z1I4	0.0	A0A2H3Z1I4_PHODC; transcription factor bHLH87-like isoform X1
STRING	XP_008806843.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-56	bHLH family protein