PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 224aa MW: 23289.6 Da PI: 8.1134

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924920.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.2	2.4e-40	22	82	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++lkcprCdstntkfCyynny+lsqPr+fCk CrryWtkGGalrn+PvGgg+rkn k+s XP_010924920.1 22 PEQHLKCPRCDSTNTKFCYYNNYNLSQPRHFCKDCRRYWTKGGALRNIPVGGGTRKNSKRS 82 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	16	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-33	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MQGTTAVAGA VQGGAKPPLP EPEQHLKCPR CDSTNTKFCY YNNYNLSQPR HFCKDCRRYW 60 TKGGALRNIP VGGGTRKNSK RSAASATGGA TASKRPSTST PPPPPSDHLP KPEPFSVLYP 120 PATDPDDRLL DITGSFSSLL ASSGGFGNLP ECFGSGAAGG ATVGMRNSGG PNSSIEGGMD 180 QLQSSSDSNG NENSAALENF LGDSGGWANG WSDLRIYTPG SGFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924920.1	1e-163	dof zinc finger protein DOF3.1
Swissprot	O82155	2e-40	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A2H3Z074	1e-121	A0A2H3Z074_PHODC; dof zinc finger protein DOF3.1-like
STRING	XP_008806550.1	1e-122	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-36	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]