PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924915.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 621aa    MW: 67833.5 Da    PI: 7.6642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924915.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-13466512455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  XP_010924915.1 466 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITELQ 512
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-4954240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.13462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-19465529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-14465516No hitNo description
Gene3DG3DSA:4.10.280.106.6E-19466525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10466512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-17468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.583552621IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MKTEMGTGVG SSVWSDDERA MAVAVLGHQA VDYLSSSHMS SDGLFAAVGG HADLQTKLQD  60
LVDRPVAPWA SAIFWQISRS KSGELVLGWG DGHCRELRDG EEDPRRSAAT LDDGHQKMRK  120
RVLQKLHVLS GGADDENYAL GLDRVTDVEM YFLASMYFSF PRGAGGPGRA LSSGEDIWVA  180
DPSLRLPASA VDYCVRAFLA RSAGFRTIVL VPFDTGVLEL GSVKTVPESF EALQMIRALF  240
SSGGSKPGDK KDENGSVFRL GGRAAGEEEE CPRIFGKDLN IGGRSPFRDR LSMAAKVEER  300
PLEIQPNGRN HHHRMLPVPA PAPAPVSSGM VNGLNWSRTR NLTTNCHQQK FGNGVVVMGG  360
GEVDPSARAF LPHSNGARED PRTNQFPTPK QQQPQAQSQP RQIDFSGGKT SRASGALVAR  420
LGALETEHSD AVEASCKEER PGPIIDDRRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ  480
RFYALRAVVP NISKMDKASL LGDAISYITE LQKKLKEMEA ERERWPDSPF MGPKSGVQCP  540
DIDVQAVHDE VIVRVSCPLD THPVSKVIQV FKESQINVVD SKVSASNEAV LHTFVVKSPG  600
SEQLTRDKLV AAISREATSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-27460522264Transcription factor MYC2
5gnj_B3e-27460522264Transcription factor MYC2
5gnj_E3e-27460522264Transcription factor MYC2
5gnj_F3e-27460522264Transcription factor MYC2
5gnj_G3e-27460522264Transcription factor MYC2
5gnj_I3e-27460522264Transcription factor MYC2
5gnj_M3e-27460522264Transcription factor MYC2
5gnj_N3e-27460522264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447455RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924915.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2H3Z0230.0A0A2H3Z023_PHODC; transcription factor bHLH13-like
STRINGXP_008806486.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.37e-81bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]