PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924913.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 712aa    MW: 79323.2 Da    PI: 6.1906
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924913.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.6e-24130230198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +++a+e+     +++++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD ++F+  + +++
  XP_010924913.1 130 FCKILTASDTSTHGGFSVLRRHATEClppldMSQPTPTQELAAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFIFM--RGENE 222
                     99*****************************77777888*************************************************..34888 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_010924913.1 223 ELRVGVRR 230
                     89****98 PP
2Auxin_resp103.23.2e-34256335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+s F+v+Y+Pr+  s+F+v+v+k+++a+k+ ++vGmRfkm fe+ed++e+r++Gt++gv d+++ +W  SkWrsLk
  XP_010924913.1 256 ASHAVSTHSLFTVFYKPRT--SQFIVRVNKYLEAVKHGFAVGMRFKMGFEGEDVPEKRFTGTITGVGDISS-QWASSKWRSLK 335
                     789***************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-41119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-39124245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-18128230No hitNo description
PfamPF023621.3E-21130230IPR003340B3 DNA binding domain
SMARTSM010191.1E-21130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462130232IPR003340B3 DNA binding domain
PfamPF065078.4E-32256335IPR010525Auxin response factor
PfamPF023091.7E-5582625IPR033389AUX/IAA domain
SuperFamilySSF542772.6E-14585667No hitNo description
PROSITE profilePS5174528.685589681IPR000270PB1 domain
PfamPF023096.4E-8632679IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MAFGSASPAS RPTERPDGAW EEEGLSEELW RACAGPLVEV PRQNERVFYF PQGHMEQLVP  60
STDQELDQQI PLFNLPSKIL CRVVNIELRA EPETDEVYAQ ITLLPEADQS EPASPDPSLP  120
EPLRPTVHSF CKILTASDTS THGGFSVLRR HATECLPPLD MSQPTPTQEL AAKDLHGFEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFIFMRGE NEELRVGVRR LVRQQNTIPS  240
SVISSQSMHL GVLATASHAV STHSLFTVFY KPRTSQFIVR VNKYLEAVKH GFAVGMRFKM  300
GFEGEDVPEK RFTGTITGVG DISSQWASSK WRSLKVQWDE ATNIQRSERV SPWDIEPFTG  360
PMTALHVTQP VFMKNKRSRS PWDLSGFEAS SGFWYTGRTQ SQEVGAPDAQ TSETQVLLPQ  420
RPXESNDSNF LKSHSPHDSR LADCWLKDLQ SPLKSSSSSM TDVSLKLFEG VKGETKATDP  480
PWPPHLSSSL NEKPSLRLCN NIETWKKPES SSTCRLFGID LFSPSSSFEK AAVGLISLTG  540
AAGEDPLQVT ASLEDSDQHS GLSKAPKEPI HGLQAFPKEI QGNQNCPTRS RTKVHMQGIA  600
VGRAVDLTNL EGYDDLILEL EQMFDIKGEL HHRNKWEVVY TDDEGDMMLV GDDPWPEFCK  660
MVKKISIYTS EEVKKMRPRG KFPVAPASEG EGAGGVTSAA VLQVSKIESF QN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1772335917356Auxin response factor 1
4ldw_A1e-1772335917356Auxin response factor 1
4ldw_B1e-1772335917356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029121129.10.0LOW QUALITY PROTEIN: auxin response factor 18-like
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A2H3Z0470.0A0A2H3Z047_PHODC; Auxin response factor
STRINGXP_008806441.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]