PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924752.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HSF | ||||||||
Protein Properties | Length: 317aa MW: 35479.2 Da PI: 7.1501 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.5 | 2.5e-34 | 19 | 111 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F+ k+y++++d++++ li+w + +nsf+vld+ +f++ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+h+ F +g+++ll XP_010924752.1 19 FVAKTYQMVNDPRTDALIQWGKGNNSFLVLDPADFSQLLLPSYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHEFFLRGQTHLLPC 104 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k++ XP_010924752.1 105 IVRRKKR 111 ***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-37 | 13 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.2E-54 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.89E-34 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.4E-18 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-29 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-18 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-18 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MEEESSCGKI GYQIQVAPFV AKTYQMVNDP RTDALIQWGK GNNSFLVLDP ADFSQLLLPS 60 YFKHSNFSSF VRQLNTYGFR KVDPDRWEFA HEFFLRGQTH LLPCIVRRKK RNDGSSSSSS 120 DRKEGIQGEE EEESLLKELA RLRQEQRALD EELQRMSKRL QTTEKRPQQI MSFLVKVAED 180 PDFLPRLILS KKQQLAPEKK RRLVAPSTPH PFSPPPSLLL ASEVSPPLDI GSAAGQTNFS 240 TLEHRPAGPL TVEAERTLPT SSSTLVDTGR DGGVGVNDTV ISGNQVRLLS EFGLAETSSM 300 TEKAVPFPFS LLGHGFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-23 | 16 | 108 | 17 | 120 | Heat shock factor protein 1 |
5d5u_B | 1e-23 | 15 | 108 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-23 | 15 | 108 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-23 | 15 | 108 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924752.2 | 0.0 | heat stress transcription factor C-1b | ||||
Refseq | XP_029121098.1 | 0.0 | heat stress transcription factor C-1b | ||||
Swissprot | Q6VBA4 | 3e-78 | HFC1A_ORYSJ; Heat stress transcription factor C-1a | ||||
TrEMBL | A0A2H3Z8J0 | 1e-146 | A0A2H3Z8J0_PHODC; heat stress transcription factor C-1b-like | ||||
STRING | XP_008810034.1 | 1e-147 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11298 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 3e-73 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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