PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924707.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 445aa    MW: 50592.9 Da    PI: 5.5278
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924707.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.6e-36161062101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sws++ +sf+v+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF++++F +g+ +ll++
  XP_010924707.1  16 FLTKTYDMVDDPSTNSIVSWSASDTSFIVWNPLEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDQ---------WEFANEEFVRGQSHLLKN 101
                     9********************999*****************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_010924707.1 102 IHRRK 106
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6312105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.5E-3912105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEGSQGGSGS NSPAPFLTKT YDMVDDPSTN SIVSWSASDT SFIVWNPLEF ARDLLPKYFK  60
HSNFSSFVRQ LNTYGFRKVD PDQWEFANEE FVRGQSHLLK NIHRRKPIHS HSLHHQGNSG  120
PLAETERHEL EEEIERINRD KLMLISELQK HTQQQHGMEQ QMQTLEARLH VMEHHQRSML  180
AALTQIIQRP GFHSNFVQQS GFLSKKRRLP KTNYFYEDAN MEENRAISQS KSGEKSDVVS  240
MHPMDIEPFE KMESSLNSLE NFFRGISQAS GEDMYYDCAL HSLPSGAVIT EMNASSEDTD  300
VNLRSPSPKL HPSSPHLGDI HSSPELTEST SYAESPALPL TEIQIDIRSK VSEIDVNSEP  360
AAHEVDSSRD RAATVPTGVN DVFWEQFLTE TPGSSDTQEV QSERRDTDDR RSEGRMGERG  420
NIWWSRKNID HLAEKIGHLT SAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-26610519129Heat shock factor protein 1
5d5v_B5e-26610519129Heat shock factor protein 1
5d5v_D5e-26610519129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706716.10.0heat stress transcription factor A-4b
SwissprotQ94J161e-154HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A2H3Y2660.0A0A2H3Y266_PHODC; heat stress transcription factor A-4b-like
STRINGXP_008792312.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-82heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]