PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924584.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CPP
Protein Properties Length: 509aa    MW: 56073 Da    PI: 7.629
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924584.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.61.2e-13100139242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     +kk+CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ e+
  XP_010924584.1 100 RKKNCNCKHSKCLKLYCECFASGVYCDG-CNCTNCCNNVEN 139
                     689*************************.********9875 PP
2TCR51.52e-16184223140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_010924584.1 184 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 223
                     589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-1299139IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.662100224IPR005172CRC domain
PfamPF036388.8E-10101136IPR005172CRC domain
SMARTSM011146.2E-20184225IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12187222IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEQGIRPPAT APPDFPPKKL VRQLDFTTAY GGASPAVAAA AAAVSKALEK PSQQQQQQPQ  60
SLPPSPLPIS RPSFPIAVKP ESPKSRPRPL YEAKDGTPTR KKNCNCKHSK CLKLYCECFA  120
SGVYCDGCNC TNCCNNVENE SARHEAVEAT LERNPNAFRP KIGSSPHAVR DSREEIGDLL  180
LVGKHNKGCH CKKSGCLKKY CECFQANILC SENCKCMDCK NYEGSEERRA LFHGDHGNAL  240
YMQQAANAAL NGAIGPSGFI SPSASRKRKN QELLFSTSAK DQHNHRLGQF QQVSHLKTSV  300
PATSFPSIPA ARSINPVPLG SSKVTYRSLL ADIVHPEDAK ELCTLLVVVS GETAKTFADR  360
RSQEKLGERE DQTESSLASS NHDRDEHHKE PDAQQTSADE CSSGTHVDKT SIEESVSDCA  420
DGQKGSRPMS PGTLALMCDE QDTMFEASLN AGMPPRFPYN QNMSEVYAEQ ERCVLTEFRD  480
CLHRLVNYGR IKEIRSRFQM IRGFFQDTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-3110123311132Protein lin-54 homolog
5fd3_B3e-3110123311132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924584.10.0protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-169TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2H3Y3X70.0A0A2H3Y3X7_PHODC; protein tesmin/TSO1-like CXC 5
STRINGXP_008793061.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-159Tesmin/TSO1-like CXC domain-containing protein