PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010924573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 355aa MW: 38321.8 Da PI: 5.6459 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00028 | 191 | 230 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_010924573.1 191 ARKQKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 230 57788999999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.325 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-10 | 190 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-5 | 192 | 234 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-7 | 194 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 355 aa Download sequence Send to blast |
MSNLRPPPQQ TSLLLPSFST TTTTTSFSSS SSSVFPPNPQ LSNFLPMTLL HDNQELPESW 60 SQLLLGVLME EDSCSFTPFP VKRMENWEDQ LLYPSANTHM VDAKQEISES GHEYSHGNEE 120 IQASRSSWSL PTSSPRLCVS SFSSNALDIS NSKAERKHLQ PENSSECNST AGAALKKARV 180 QGSSAQSPLK ARKQKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSSSY 240 LGGGTRGMRR SGNGERSSIF PEDPCQLLND TCMKRRGAPN QDADDEPKDL RSRGLCLVPL 300 SYTMDVGGVG GVDYWSPAFG GGVSIEGTES AACLGLMSGY SIISGHSANP KVDCS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008793073.1 | 0.0 | transcription factor bHLH68-like isoform X1 | ||||
Swissprot | Q8S3D1 | 5e-64 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A2H3Y401 | 0.0 | A0A2H3Y401_PHODC; transcription factor bHLH68-like isoform X1 | ||||
STRING | XP_008793073.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2167 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29100.1 | 6e-66 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|