PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924573.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 355aa MW: 38321.8 Da PI: 5.6459

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924573.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00028	191	230	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_010924573.1 191 ARKQKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 230 57788999999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.325	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-10	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-5	192	234	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-7	194	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MSNLRPPPQQ TSLLLPSFST TTTTTSFSSS SSSVFPPNPQ LSNFLPMTLL HDNQELPESW 60 SQLLLGVLME EDSCSFTPFP VKRMENWEDQ LLYPSANTHM VDAKQEISES GHEYSHGNEE 120 IQASRSSWSL PTSSPRLCVS SFSSNALDIS NSKAERKHLQ PENSSECNST AGAALKKARV 180 QGSSAQSPLK ARKQKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSSSY 240 LGGGTRGMRR SGNGERSSIF PEDPCQLLND TCMKRRGAPN QDADDEPKDL RSRGLCLVPL 300 SYTMDVGGVG GVDYWSPAFG GGVSIEGTES AACLGLMSGY SIISGHSANP KVDCS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MSNLRPPPQQ TSLLLPSFST TTTTTSFSSS SSSVFPPNPQ LSNFLPMTLL HDNQELPESW  60
SQLLLGVLME EDSCSFTPFP VKRMENWEDQ LLYPSANTHM VDAKQEISES GHEYSHGNEE  120
IQASRSSWSL PTSSPRLCVS SFSSNALDIS NSKAERKHLQ PENSSECNST AGAALKKARV  180
QGSSAQSPLK ARKQKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ SQIEALSSSY  240
LGGGTRGMRR SGNGERSSIF PEDPCQLLND TCMKRRGAPN QDADDEPKDL RSRGLCLVPL  300
SYTMDVGGVG GVDYWSPAFG GGVSIEGTES AACLGLMSGY SIISGHSANP KVDCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008793073.1	0.0	transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	5e-64	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2H3Y401	0.0	A0A2H3Y401_PHODC; transcription factor bHLH68-like isoform X1
STRING	XP_008793073.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2167	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	6e-66	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]