PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924547.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family E2F/DP
Protein Properties Length: 207aa    MW: 23533 Da    PI: 8.7134
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924547.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP66.73e-213711671
         E2F_TDP 16 lleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                    +++k+e+ g++t+neva+e+++e             ++kn+rRR+YD++NVL+a++ i k +k+eirw g
  XP_010924547.1  3 VCKKVEAkGRTTYNEVADEIIAElaplqtsansfvfEEKNIRRRVYDAFNVLMAIDAIVK-DKKEIRWVG 71
                    89999999****************************************************.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-29174IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.8E-15272IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-16371IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013722.7E-18371IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011383.2E-3278207IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.18E-3479195No hitNo description
CDDcd144581.61E-3179179IPR014889Transcription factor DP, C-terminal
PfamPF087811.6E-3179198IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MLVCKKVEAK GRTTYNEVAD EIIAELAPLQ TSANSFVFEE KNIRRRVYDA FNVLMAIDAI  60
VKDKKEIRWV GWSCTKTAEL KGLKEVRMNL MNSIQRKARF LKDLEDQFVD HQNLMLRNQR  120
LHKSANVSSQ GVALPFLLVR TNPKATVEIE ISEDQHFVKF DFNGTPFTVH DAAAILKEMR  180
FSQALETENA TRSSLDGSNL ITDPSGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-211711788PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924545.11e-152transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-66DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2H3Y4231e-134A0A2H3Y423_PHODC; transcription factor-like protein DPB isoform X2
STRINGXP_008793105.11e-133(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.15e-69Transcription factor DP