PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010924429.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TCP

Protein Properties

Length: 389aa MW: 42089.2 Da PI: 7.121

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924429.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.4	1.5e-35	59	159	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsssg 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WLl+ ak++i+el+++ + +s+s+ s+ s++++ ++ XP_010924429.1 59 TGRKDRHSKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLLKHAKASIDELAELprwrppttT-TSSSDP----SRPSNQHDLHE 148 79**************************************************************877665531.222111....22222222222 PP TCP 89 ..........k 89 + XP_010924429.1 149 epvptepaadQ 159 12223222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-32	59	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.474	61	119	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MEESSHHHRN HQQQLLLLHH HQQQQQQRRP LPHNSRMGGL RGAAGEVVEV SGGHIVRSTG 60 RKDRHSKVCT AKGLRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLLK HAKASIDELA 120 ELPRWRPPTT TTSSSDPSRP SNQHDLHEEP VPTEPAADQA AYSSATFLPP SLNSDSIADT 180 IKTFFPMATT TASSTYQNYP PDLVSRSSNQ AQDLRLSLQS FQDPMFHQNQ TPAASSQQNF 240 LSGNLVFGST SAGWPEQNQK VVAWNVAETG DGGSGGGGDG GYGSNMPPPQ AVPLHPALSL 300 SQLFSQRGTL QSSNSTSVRS WMDPIAAAAG HQIHPAGIHS SWPSVTATGF IFSDGGGFSG 360 FHIPAWIQGE EEHGGISSKP PSDSSASNQ

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MEESSHHHRN HQQQLLLLHH HQQQQQQRRP LPHNSRMGGL RGAAGEVVEV SGGHIVRSTG  60
RKDRHSKVCT AKGLRDRRVR LSAHTAIQFY DVQDRLGYDR PSKAVDWLLK HAKASIDELA  120
ELPRWRPPTT TTSSSDPSRP SNQHDLHEEP VPTEPAADQA AYSSATFLPP SLNSDSIADT  180
IKTFFPMATT TASSTYQNYP PDLVSRSSNQ AQDLRLSLQS FQDPMFHQNQ TPAASSQQNF  240
LSGNLVFGST SAGWPEQNQK VVAWNVAETG DGGSGGGGDG GYGSNMPPPQ AVPLHPALSL  300
SQLFSQRGTL QSSNSTSVRS WMDPIAAAAG HQIHPAGIHS SWPSVTATGF IFSDGGGFSG  360
FHIPAWIQGE EEHGGISSKP PSDSSASNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-20	66	119	1	54	Putative transcription factor PCF6
5zkt_B	1e-20	66	119	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924430.1	0.0	transcription factor PCF5-like
Refseq	XP_029121022.1	0.0	transcription factor PCF5-like
Swissprot	Q9MAH8	2e-83	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A2H3ZR62	0.0	A0A2H3ZR62_PHODC; transcription factor PCF5-like
STRING	XP_008793159.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5839	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	9e-63	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]