PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB

Protein Properties

Length: 198aa MW: 22753.2 Da PI: 5.3649

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010924268.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W+ ar g++Rt+k+c++rw++yl XP_010924268.1 22 KGPWTMEEDLILINYIANHGEGVWNNLARSAGLNRTGKSCRLRWLNYL 69 79********************************************97 PP
2	Myb_DNA-binding	53.4	5.9e-17	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Iar ++ gRt++++k++w++ XP_010924268.1 75 RGNITPEEQLLIMELHARWGNR-WSKIARQLP-GRTDNEIKNYWRT 118 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-24	14	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.668	17	69	IPR017930	Myb domain
SuperFamily	SSF46689	2.36E-30	20	116	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-13	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-16	22	69	IPR001005	SANT/Myb domain
CDD	cd00167	3.24E-10	24	69	No hit	No description
PROSITE profile	PS51294	25.452	70	124	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-24	73	125	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-14	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-15	75	118	IPR001005	SANT/Myb domain
CDD	cd00167	7.10E-11	79	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0080086	Biological Process	stamen filament development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MVEEANSMDK GINCSEEAEV RKGPWTMEED LILINYIANH GEGVWNNLAR SAGLNRTGKS 60 CRLRWLNYLR PDVRRGNITP EEQLLIMELH ARWGNRWSKI ARQLPGRTDN EIKNYWRTRI 120 QKKVKHGESS DYQHAMLIDE ASTTTSQTNS VEDGGAQPSY TQQRETNPVA LAPPFSTESC 180 DNFWSVEDFW SMQSFNGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-27	19	124	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924268.1	1e-148	myb-related protein 305
Swissprot	P81391	5e-85	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A2H3YLY2	1e-133	A0A2H3YLY2_PHODC; myb-related protein 305-like
STRING	XP_008800726.1	1e-133	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	3e-79	myb domain protein 24

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]