PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924140.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 918aa    MW: 104778 Da    PI: 7.6156
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924140.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.68.4e-2397182290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fYn+YA++ GFsvrk +  ++ ++g+i +r f Cs+eg+r+++      ++++r+  rt+C a+++ k ++d+ w+v+k+  eHnH+l+
  XP_010924140.1  97 FYNKYAHRKGFSVRKGHLGRR-KDGTIRNRVFLCSNEGSRQKHCAY--MTKKPREAVRTNCMARIEYKVSRDNAWVVSKMIYEHNHPLV 182
                     9****************9997.8888***************99888..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-2097182IPR004330FAR1 DNA binding domain
PfamPF105511.1E-30307401IPR018289MULE transposase domain
PROSITE profilePS5096610.175576623IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-4598620IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-7598625IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MGSPGSSSDN ESVEIFEDSL SDKEEDVAEI HNMSKGPPSG ENVVPKVSQA SKEGDAGSFA  60
LVVKDINNVD KSKAYGNLRL EPEVGMVFHS EDQAYLFYNK YAHRKGFSVR KGHLGRRKDG  120
TIRNRVFLCS NEGSRQKHCA YMTKKPREAV RTNCMARIEY KVSRDNAWVV SKMIYEHNHP  180
LVRPHKAHLL RSHRRSLLAQ RDGMQNAVEM GNVAEKPARA LEFPVEESRD AETVGFLLKD  240
QSSYLHTNRM RELDKGDAQV LLEFLKAKQL EDPSFFYAIQ LDDREQVTNF FWADARSILD  300
YSYFGDVVLF DTTYQTNKSE IPFAPFIGIN HHKQIVVFGA ALLLDETTES FVWLFKTFMV  360
AMSGRQPKTI FTDHCPALLR AISFTLPEAC HRLCLWHILQ NSAIHISHVH SGEPTFQKDF  420
RNCIYEGGSE EDFHTRWLDL VNKYDPAGNA WLEDLYAVRE KWALVYHKNS FCASMSTMKW  480
SESMKNHFKK HFNRKLPLSK FLEQHQRSLI RFREKELYED YKSRQTKPVL LVDMPMLNEA  540
AESYTRVVYN EFEDEIKSQL SYLCEQVDFD GTVEVYKVSF PENHGYGFVE YNSCNFMVTC  600
SCRKFETTGI LCMHALKVLL FRNILSLPSR YILKRWTKYA NVEVLSYRQR SVADSDGQET  660
LTLQYTRVCQ KAITIAVKSA FSEDALQIFE NELHKLMLEV ENVLHIAPLT RQTDDEDVTV  720
IDDMQQNALE GSKKTRGRKR RLKGELEQKR KKITQPTSSS VDMDIQNQPS QNKGKTRQAG  780
DVLGPAMVSE SSNVPSCPRD GATSYCNPMA LQPSGCTSFT QEVVMPAQES FTSSQGIFDH  840
TMPSQGVTNP NIAWCTARGS VGPMPIMQGQ PNNFVSWMVQ PRGVPNVSMS QHQPVHSAVP  900
NQHQPLPRKL NLDINKGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1732742KKTRGRKRRLK
2737751RKRRLKGELEQKRKK
3738751KRRLKGELEQKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924140.10.0protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A2H3Z7080.0A0A2H3Z708_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X3
STRINGXP_008809351.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-130FAR1-related sequence 5