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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_010924129.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family |
RAV |
| Protein Properties |
Length: 371aa MW: 41083.7 Da PI: 10.204 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010924129.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 40.6 | 6.2e-13 | 66 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f + +Aa+a++ a+++++g
XP_010924129.1 66 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEAQAARAYDVAAQRFRG 114
89****9888.8*********3.....5**********99*************98 PP
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| 2 | B3 | 95.6 | 3.2e-30 | 197 | 296 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++ e
XP_010924129.1 197 FDKAVTPSDVGKLNRLVIPKQHAEKHfplptgSATACKGVLLGFEDACGKMWRFRYSYWNSSQSYVLTKGWSRFVKEKRLQAGDVVTFQRSTGPE 291
89*************************999753333488999***********************************************875555 PP
E..EE CS
B3 90 felvv 94
+++++
XP_010924129.1 292 KRFFI 296
55565 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MIDMDSSCID VDEVRSETEK RPPPPPPPPP PPHHGGQRLQ RVGSGASVVL DPEVILEAES 60
RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEAQ AARAYDVAAQ RFRGRDAVTN 120
FKPLSETLDD DAAELSFLRS HSKAEIVDML RKHTYHDELQ QGKRAFRAAR RNMPAAAAAG 180
GWAFAGPPGG AQREHLFDKA VTPSDVGKLN RLVIPKQHAE KHFPLPTGSA TACKGVLLGF 240
EDACGKMWRF RYSYWNSSQS YVLTKGWSRF VKEKRLQAGD VVTFQRSTGP EKRFFIDWKP 300
RAIGGHAKDG LFQVVRLFGV NIVKAPAVAV GTGDGLDRGV GVVGWSKKGA RDVDQFMPSP 360
GYFKKQKIED S
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
| Publications
? help Back to Top |
- Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Sun YW, et al.
Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
Sci Rep, 2015. 5: p. 16476
[PMID:26602265] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
Plant Sci., 2015. 241: p. 78-95
[PMID:26706061] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039] - Li P, et al.
The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
Physiol Plant, 2017. 159(4): p. 416-432
[PMID:27747895]
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