PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923996.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 574aa    MW: 64380 Da    PI: 6.2479
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923996.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.98.2e-1312055732373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L++cAea+s+++ ++ + l+++ + l+s  g+p+qRl ay++e+L ar  +s++++y+al++++ +   s+e l++++++++++P++kf+++
  XP_010923996.1 205 KQMLIRCAEALSEDKINEFEMLVQEARALVSIVGEPIQRLGAYMVEGLVARKESSGTNIYRALRCQKPE---SKELLSYMRILYDICPYFKFGYM 296
                     689*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + + l+ +g+ L+++ +++++p+ef+ l +    ++
  XP_010923996.1 297 AANGAIAEALRNEDRIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGDGLQLVGKMLSDMSKKFNIPLEFHSL-SVYGPQV 390
                     ******************************************************999999**************************5.88899** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+++n+++Fl+r +e+l+yysa+f+s++++lpr+s+eri+
  XP_010923996.1 391 TREMLDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESNTNTTPFLTRCMETLDYYSAMFESIDVTLPRDSKERIN 485
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+++ivn++aceg+er+erhe l+kWr+rl++aGFkp pls+++++ +k ll  ++ d y++ e++g+++lgWk+r+L+s+SaW
  XP_010923996.1 486 VEQHCLAKDIVNIIACEGEERVERHELLGKWRSRLTMAGFKPFPLSSYVNSVIKNLLGCYS-DKYTLVEKDGAMLLGWKNRNLISASAW 573
                     *********************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.558178555IPR005202Transcription factor GRAS
PfamPF035142.8E-128205573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDSHQLFRCG LTGADASSEF PSPRTLAHSE WALGSIKLGL GNSPNSPLSS QFDCDTLSIL  60
SSSQEQYSST ETISGVSPSQ YSPLETNSSF KQTHIHPAES IQVPSNSFYA VSKQSMRRAL  120
QKIESVLMAP DTDDATTSTN VESDENKQLQ FTKQRSRTWS HESQMEPPAL IRPQSTSGRF  180
PKASHEVHPE KRLREMKEFS ESDVKQMLIR CAEALSEDKI NEFEMLVQEA RALVSIVGEP  240
IQRLGAYMVE GLVARKESSG TNIYRALRCQ KPESKELLSY MRILYDICPY FKFGYMAANG  300
AIAEALRNED RIHIIDFQIA QGTQWITLIQ ALAARPGGPP HVRITGIDDP VSEYARGDGL  360
QLVGKMLSDM SKKFNIPLEF HSLSVYGPQV TREMLDIRPG EALAVNFTLQ LHHTPDESVD  420
VNNPRDGLLR MVKGLSPKVT TLVEQESNTN TTPFLTRCME TLDYYSAMFE SIDVTLPRDS  480
KERINVEQHC LAKDIVNIIA CEGEERVERH ELLGKWRSRL TMAGFKPFPL SSYVNSVIKN  540
LLGCYSDKYT LVEKDGAMLL GWKNRNLISA SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-7021057325378Protein SCARECROW
5b3h_A2e-7021057324377Protein SCARECROW
5b3h_D2e-7021057324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923996.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2H3YEH10.0A0A2H3YEH1_PHODC; chitin-inducible gibberellin-responsive protein 1-like isoform X1
STRINGXP_008797425.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]