PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25420.9 Da PI: 8.2075 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1e-11 | 72 | 119 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K++Ka+iL Av+ + +L XP_010923988.1 72 SKACREKLRRDRLNDRFLELGSILEPG---KPPKMDKAAILSDAVRMVTQL 119 5678**********************9...99**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.24E-9 | 66 | 124 | No hit | No description |
PROSITE profile | PS50888 | 13.548 | 68 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 73 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-14 | 74 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-14 | 75 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVLPENSNWV FDGSLIDDMS APGTGFYWTP QGINSSSNAS VEISGSFVDS GGIKESGSKK 60 RVRSESSSQP GSKACREKLR RDRLNDRFLE LGSILEPGKP PKMDKAAILS DAVRMVTQLR 120 SEAQKLKDSN ENLQEKIKEL KVEKNELRDE KQRLKAEKEN LEQQIKMLNT RASFVAHPPV 180 IPAAFAAQGQ TAAHKLMMPV ISYPGFPMWQ FMPPADVDTS KDAESCPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923988.1 | 1e-170 | transcription factor ILR3 isoform X1 | ||||
Swissprot | Q9FH37 | 3e-94 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A2H3YLD5 | 1e-160 | A0A2H3YLD5_PHODC; transcription factor ILR3-like | ||||
STRING | XP_008800495.1 | 1e-161 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 5e-92 | bHLH family protein |