PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010923786.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 420aa MW: 46026.1 Da PI: 9.4827

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010923786.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.5	9.9e-09	113	143	61	91
FAR1 61 gCkaklkvkkekdgkwevtkleleHnHelap 91 Cka+++v + +gkw v+kl+ eHnHel p XP_010923786.1 113 RCKAMMEVVGKVHGKWTVSKLVVEHNHELLP 143 7***************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-6	113	143	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MVLISEITDH ALNEEDDEGR KEKEKGPREE PAQEELKVDE EKGSPESSAA AGEVKESPAE 60 RTEGSSAGQT LYKECTLRVA CIMRNYLHMR QAGVPVSGQG PPAGEAAAPV GDRCKAMMEV 120 VGKVHGKWTV SKLVVEHNHE LLPHKDAGKD GAVLVPVMGM EFESVEAAKA LYYVYGEKSG 180 FKARTGSNRR SAGSGALIMQ RFLCWRGNYL MYRKITDTNA GKRRRGPYRK RTRRLEEEAA 240 AAAKKDGDVV EIIQVESSTE KGGVAVDDRG VEVQSGPPVK EQAVAEKDVG QKPPTPSIGM 300 PAQAVAAAAG KDGKKGKDDG KAIPVANTAE SRLLRELGVR VSRYTEEERR DIIIRYMMKR 360 TNRQGVERPV KVPSRRALAE RRQRGIGGRF LGRDESQQNF QWMREAKMEL LTAGGNSEAA

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MVLISEITDH ALNEEDDEGR KEKEKGPREE PAQEELKVDE EKGSPESSAA AGEVKESPAE  60
RTEGSSAGQT LYKECTLRVA CIMRNYLHMR QAGVPVSGQG PPAGEAAAPV GDRCKAMMEV  120
VGKVHGKWTV SKLVVEHNHE LLPHKDAGKD GAVLVPVMGM EFESVEAAKA LYYVYGEKSG  180
FKARTGSNRR SAGSGALIMQ RFLCWRGNYL MYRKITDTNA GKRRRGPYRK RTRRLEEEAA  240
AAAKKDGDVV EIIQVESSTE KGGVAVDDRG VEVQSGPPVK EQAVAEKDVG QKPPTPSIGM  300
PAQAVAAAAG KDGKKGKDDG KAIPVANTAE SRLLRELGVR VSRYTEEERR DIIIRYMMKR  360
TNRQGVERPV KVPSRRALAE RRQRGIGGRF LGRDESQQNF QWMREAKMEL LTAGGNSEAA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029121187.1	0.0	uncharacterized protein LOC105046772
TrEMBL	A0A3Q0I2M5	0.0	A0A3Q0I2M5_PHODC; uncharacterized protein LOC113462603 isoform X2
STRING	XP_008787331.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-08	FAR1 family protein