PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923656.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 950aa    MW: 106073 Da    PI: 6.7167
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923656.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_010923656.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 217
                     99****************************986555545..8************************************************..788 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010923656.1 218 NNQLLLGIRRA 228
                     8889****997 PP
2Auxin_resp121.56.1e-40253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_010923656.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-42121241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-21126227No hitNo description
PfamPF023621.4E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548127229IPR003340B3 DNA binding domain
SMARTSM010195.9E-25127229IPR003340B3 DNA binding domain
PfamPF065078.5E-35253336IPR010525Auxin response factor
PfamPF023092.1E-6806902IPR033389AUX/IAA domain
SuperFamilySSF542771.44E-6812891No hitNo description
PROSITE profilePS5174522.5817901IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 950 aa     Download sequence    Send to blast
MRLSTSGLPQ QTQEGEQKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
IDAHIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPEEQKDL YLPAELGTLS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPVQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNENNQ LLLGIRRANR PQTVMPSSVL  240
SCDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSAFP LRLKRPWPSG LPSLHAGGKD DEIGLNPSPM WLRDGDHGLP SLSFQGLGVT  420
PWMQPRLNAS MLGLQPDLYQ AMAAAAQQEM RTVDPPKQAT STILQFQQPQ SLTSRSTLLA  480
SQILQQMQPN SQQALLQTIQ ENQGQNQAQC QFSQHQLLHY NSFGDQQQQL QPPLLQQQQP  540
HQRLQQQQQH QQLQQQQHQQ QHQQLQQQQH QQSQQQQIHH QQQHQQSQQH QQIQQTHLCN  600
LQQIPNVVSS LSQLASTSQS PSSSLQTISS FCQQQTFPGT TMNAASISGV SPLHSILRSF  660
SPEETSNILN LPRTTSLSTS GTWSSKRLAV ESMLSSGTQC VQPQVEQLDQ QSNISQHSVT  720
LPPFPGKDCL LDQECNTDPQ NHVLFGVHID SSSLLMQNGI KNLRSVGSET DSTAMPFLTA  780
AGTDFPLNQA LTSSNCAEES GLLQSPENGG HVNPQNGTFV KVYKSGSFGR SLDITRFNSY  840
PELRSELGRL FGLEGQLEDP MRSGWQLVFV DRENDVLLLG DDPWQEFVNN VWCIKILSPQ  900
EVQQMGKEGG ELLSTAPSKR LPGSGCDGYS SRQDSRSMRN GIASVMPLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651135741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923657.10.0auxin response factor 17 isoform X1
RefseqXP_029120852.10.0auxin response factor 17 isoform X1
RefseqXP_029120853.10.0auxin response factor 17 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2H3X3E60.0A0A2H3X3E6_PHODC; Auxin response factor
STRINGXP_008777704.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]