![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010923471.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27474.4 Da PI: 8.2054 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.3 | 2.8e-08 | 104 | 148 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr RR+r+ ++++ Lr +l ++ K +K ++ + A Y+++L XP_010923471.1 104 HLMRERERRERLSQGYADLRHMLCTR-----SKGDKNSVIQAAAAYLQEL 148 789**********************7.....5888999999999999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.795 | 99 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-12 | 99 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-5 | 104 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-8 | 104 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-6 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MDPFPFRLQG DDEYQEYLNL AFSPPLSFDL LPAISNPQLP PQSAFVDYTT FNGETSSQSS 60 GCRQQQTGGR NIHRRVIGFL RTIPMATRQE SFRDVPEASK EFRHLMRERE RRERLSQGYA 120 DLRHMLCTRS KGDKNSVIQA AAAYLQELKG ARDVLRKCNE ELEEMVAVNR RMVEGATIKL 180 RVMNPSSTID SLIGALQRIR EMELEVASIE ANLCSQELSA VVNLKSKVCM TGLELKKQMW 240 Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923470.1 | 1e-168 | transcription factor BHLH148 isoform X2 | ||||
TrEMBL | A0A2H3XN55 | 1e-101 | A0A2H3XN55_PHODC; transcription factor BHLH148-like | ||||
STRING | XP_008786099.1 | 1e-102 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43650.1 | 8e-11 | bHLH family protein |