PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010923468.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WRKY

Protein Properties

Length: 356aa MW: 39143.4 Da PI: 10.1431

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010923468.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.1	1.4e-31	290	347	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ XP_010923468.1 290 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLVVTYEGEHNHT 347 9**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.2E-18	241	286	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.5E-33	276	347	IPR003657	WRKY domain
PROSITE profile	PS50811	29.907	283	346	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-27	286	347	IPR003657	WRKY domain
SMART	SM00774	1.2E-38	288	348	IPR003657	WRKY domain
Pfam	PF03106	3.4E-27	290	346	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEQVEEANRA AVESCHGLLS LLSQSQDQVQ YRNLVAETGE AVSRFKRVAS MLSDGVGHAR 60 VRIVKGVQSP FHHKVFLDHP LVLSEIDPSP KPLQLLPKSL LDTSAPELGS SAKNSQQLTQ 120 KILFENPGLD LNSSSSRSTL QLAPQGPPTA AHFQFLQQQQ NNQRFQLQQQ IKFQADMFRR 180 SNGGINLKFD SSSCTPTASS ARSFLSSLSM DGSVASLDGK AFHLIGGPAA SDPVSTHLPP 240 KRRCSGRGED GNGKCATAGR CHCSKRRKLR VKRSIKVPAI SNKLADIPPD EYSWRKYGQK 300 PIKGSPHPRG YYKCSSMRGC PARKHVERCL EDPSMLVVTY EGEHNHTRLL TQSAHT

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEQVEEANRA AVESCHGLLS LLSQSQDQVQ YRNLVAETGE AVSRFKRVAS MLSDGVGHAR  60
VRIVKGVQSP FHHKVFLDHP LVLSEIDPSP KPLQLLPKSL LDTSAPELGS SAKNSQQLTQ  120
KILFENPGLD LNSSSSRSTL QLAPQGPPTA AHFQFLQQQQ NNQRFQLQQQ IKFQADMFRR  180
SNGGINLKFD SSSCTPTASS ARSFLSSLSM DGSVASLDGK AFHLIGGPAA SDPVSTHLPP  240
KRRCSGRGED GNGKCATAGR CHCSKRRKLR VKRSIKVPAI SNKLADIPPD EYSWRKYGQK  300
PIKGSPHPRG YYKCSSMRGC PARKHVERCL EDPSMLVVTY EGEHNHTRLL TQSAHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	281	346	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010923468.1	0.0	protein WRKY1 isoform X1
Refseq	XP_019706573.1	0.0	protein WRKY1 isoform X1
Swissprot	Q9SR07	1e-108	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A2H3YYT4	0.0	A0A2H3YYT4_PHODC; protein WRKY1-like isoform X1
STRING	XP_008805954.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	8e-91	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]