PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 26656.7 Da PI: 6.2937 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.9e-11 | 127 | 174 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++YI+ Lq XP_010923319.1 127 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 174 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-18 | 121 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.13E-11 | 121 | 178 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-18 | 123 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.221 | 123 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-8 | 127 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 129 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDPSSLVSQA PLPEVWQFPM VGVPPGGPRV GRMKPGPEAS AVGNRDGSLD ESTVTEQSGG 60 NWGRRKRRDS ASEDESSKLV STSSGNDLAE ASSGICNKTV DQNPPPPEPP KQDYIHVRAR 120 RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVIGKA SVLDEIINYI QALQRQVEFL 180 SMKLEAVNSR MNTGIEGFPA KDFGAQTYDT TSSLAFNTQP AREYGQGSAT EWLHMQVGGA 240 FERVT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923316.1 | 1e-171 | transcription factor BHLH089 | ||||
Swissprot | Q69WS3 | 1e-85 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A2H3Z5K2 | 1e-145 | A0A2H3Z5K2_PHODC; transcription factor BHLH089-like isoform X2 | ||||
STRING | XP_008808720.1 | 1e-145 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 3e-75 | BIG PETAL P |