PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010923316.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 268aa MW: 29305.8 Da PI: 6.8019

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010923316.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.3e-11	150	197	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++YI+ Lq XP_010923316.1 150 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 197 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.55E-11	144	201	No hit	No description
SuperFamily	SSF47459	3.14E-18	144	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.221	146	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-18	146	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-8	150	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-11	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDPSSLVSQA PLPEVWQFPM VGVPPGGPRV GRMKPGPEAS AVGNRDGSLD ESTVTEQSGG 60 NWGRRKRRDS ASEDESSKLV STSSGNDLTD SEVKRPKIMK STNEMGNLKM EAEASSGICN 120 KTVDQNPPPP EPPKQDYIHV RARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI 180 GKASVLDEII NYIQALQRQV EFLSMKLEAV NSRMNTGIEG FPAKDFGAQT YDTTSSLAFN 240 TQPAREYGQG SATEWLHMQV GGAFERVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010923316.1	0.0	transcription factor BHLH089
Swissprot	Q69WS3	3e-93	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A2H3Z5L8	1e-161	A0A2H3Z5L8_PHODC; transcription factor BHLH089-like isoform X1
STRING	XP_008808720.1	1e-162	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3065	35	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	3e-76	BIG PETAL P