PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923202.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 535aa    MW: 58830.6 Da    PI: 7.6339
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923202.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.23.7e-103363731954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  XP_010923202.1 336 FEHflHPYPTDTDKQILAKQTGLTRNQVSNWFINARVR 373
                     554459******************************88 PP
2BELL97.51.1e-31204272472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e+  kk++L+s+l+eV ++Ykqy++q+q+vi+sFe vagl +a+pY+s+Alka+ +hFrcLk++i++q+
  XP_010923202.1 204 EHPWKKTRLVSMLDEVRRKYKQYYQQVQAVIASFESVAGLSTAAPYASMALKAMLKHFRCLKNRISNQL 272
                     7778**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-41132270IPR006563POX domain
PfamPF075263.9E-37137269IPR006563POX domain
PROSITE profilePS5007112.244314377IPR001356Homeobox domain
SMARTSM003892.4E-10317381IPR001356Homeobox domain
CDDcd000865.36E-13317378No hitNo description
SuperFamilySSF466894.28E-17319384IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-28320381IPR009057Homeodomain-like
PfamPF059202.6E-18334373IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSSAAEGYGG GGGGQEQLLH HYHHQTYHVP QHSRREKLRF PPEESPPPTS FFFHHDPSSL  60
TTFLPSSSSS YYSSNPSYTF SPTTQFSGHR GFSLSLASSS SSSSKPPSTS LPHHQFAAGP  120
APRPAGPLGP FTGYAAVLNR SRFLEPAQQL LEEICDVGRR QGLSGGDGGM LLDADPPELS  180
SLDHHEMEGL AGGGVEESGI SGAEHPWKKT RLVSMLDEVR RKYKQYYQQV QAVIASFESV  240
AGLSTAAPYA SMALKAMLKH FRCLKNRISN QLSCTNKVLG REGLSREESS SFGLTNCGAG  300
LQRAPNSSGT FGQAHVWRPQ RGLPERAVSV LRAWLFEHFL HPYPTDTDKQ ILAKQTGLTR  360
NQVSNWFINA RVRLWKPMVE EIHSLEMRKP HKAPAADRNR NTEEKTQLPL ESMAPSSSSQ  420
PLHSSSSSQK NQNPSTELFR DDLTHLSSHI QEPLNFVYDN LSCHHHHGMD VATGAKGDVS  480
LTLGIQNNGV CLAEPLPMNV VRHFGLEDCG DAYVIGAFEG QDRHFGKDTW RAFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-17323381563Homeobox protein Meis2
4xrm_B9e-17323381563Homeobox protein Meis2
4xrs_A9e-17323380158Homeobox protein Meis1
4xrs_B9e-17323380158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923202.10.0BEL1-like homeodomain protein 9
TrEMBLA0A2H3XLA70.0A0A2H3XLA7_PHODC; BEL1-like homeodomain protein 9
STRINGXP_008785491.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-65TALE family protein