PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922993.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 562aa    MW: 62842.4 Da    PI: 4.9962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922993.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-06441484755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      + r RR+ri ++ +eL +l+P  +      K++ ae+ + A +Y+k Lq
  XP_010922993.1 441 VAARERRKRISEKTQELGKLIPGgN------KMNTAEMFQAAYKYVKFLQ 484
                     5679******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF141443.2E-2343109IPR025422Transcription factor TGA like domain
PROSITE profilePS5088811.884434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.13E-7437487No hitNo description
SuperFamilySSF474591.83E-10437490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-10438488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-8440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAEQEIFAHF FECWLGQLDR DLQALLAADV PSLDPQHQPH SDANNNEHHL RSLVDMVKGH  60
YEYYYRAKLA SARRDVLAIF SPAWATSTEK LFLWAGGWRP GAAFQILYSE SGRRVEPWLV  120
QGVLRDDDLA GLSALQLERV DQLQRRTLET ERMISEEEAE AQELVAWPQM MEISHEITVS  180
GLEVAAMEDG LVGAKEAMRR VLERADQLRL ETIQSVVGIL SPRQAVQFLA AAGKLLLRVH  240
EFGKAVDAAA AVMPDGIESE RRRRIYSHFM ALSFHSNWES LDHPSPEMAL FHDHQSEVAD  300
ALLGFFCDPL EASCLPIDSL FDPPDDQFYA ETDPYSLTSF NHPSLSAPSL LSIPPDHCAS  360
RNEIDLYQCP KRPRSCSDLY HPSDLMLEAN SYNGAVIGPM MASFQAPRLL SEFAVPPPAI  420
GLPVCNVERK MNGGCLSAQS VAARERRKRI SEKTQELGKL IPGGNKMNTA EMFQAAYKYV  480
KFLQAQVGIL GLMSSIQGWK ASSQVEQQLQ VLLGSTTIQE KLYGEGRCVV PKEVVEAMAQ  540
DHEIKSNQLI CRDLDRFTES MG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.15e-30bHLH family protein