PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922512.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 174aa    MW: 18849 Da    PI: 5.8307
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922512.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB188.25.9e-5927123197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimkk+lPanaki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplk+yl+kyre+eg
  XP_010922512.1  27 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKLYLQKYREMEG 121
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  XP_010922512.1 122 DS 123
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-5622134IPR009072Histone-fold
SuperFamilySSF471133.73E-4130133IPR009072Histone-fold
PfamPF008083.4E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-226179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-228098No hitNo description
PRINTSPR006151.1E-2299117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAEAPASPVG GGGSHESGGE QSPRSTVREQ DRFLPIANIS RIMKKALPAN AKIAKDAKET  60
VQECVSEFIS FITSEASDKC QREKRKTING DDLLWAMATL GFEDYIEPLK LYLQKYREME  120
GDSKVSAKGG DNSARKDAAG PQPGPSTQGM GQQGSFTQGM NYMQPQFHNG DISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A4e-4926118597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922512.11e-128nuclear transcription factor Y subunit B isoform X4
SwissprotP252093e-89NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A2H3XH411e-106A0A2H3XH41_PHODC; nuclear transcription factor Y subunit B-like isoform X4
STRINGXP_008805034.11e-104(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.14e-75nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]