PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010922502.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 294aa MW: 31665.3 Da PI: 8.3876 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.8 | 1.5e-40 | 37 | 98 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +++alkcprCdstntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss XP_010922502.1 37 PDQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKGCRRYWTQGGSLRNVPVGGGCRKNKRSSS 98 6899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-28 | 35 | 95 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.2E-34 | 38 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.562 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MEVSNARQQV MASHPLEEVL VCSKTQQPPE RKLRPHPDQA LKCPRCDSTN TKFCYYNNYS 60 LSQPRYFCKG CRRYWTQGGS LRNVPVGGGC RKNKRSSSSS SSSSSSSKRI SDQDPTSNSN 120 PLLSSLIPPP RPYDPSDLTL AFARLHKRPT TKQLGLEDLD TFLLGNPNPN PNPGTSSIPT 180 APASGFLDIL RSGFVDTTSP SGFHNLYYGF GGNGNVEGGV SGEEVMFPFE GGFGGATTAT 240 SQGSCKAMDG GENKVLMGLQ WPLSGDGNLV MDSGRDIWNG VGSSWHGLIN SSLM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922502.1 | 0.0 | dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A2H3XHE3 | 1e-160 | A0A2H3XHE3_PHODC; dof zinc finger protein DOF2.1 | ||||
STRING | XP_008783672.1 | 1e-160 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-37 | Dof family protein |