PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922193.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 490aa    MW: 54790 Da    PI: 6.9281
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922193.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.43.1e-135524861374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                     l++lLl+cA++v++g+le ++++L+++s la+pdgd+mqR+a++fteALa+r++rs+ +ly+al pps +s++ + e+l a++ f++++P+++++
  XP_010922193.1  52 LIHLLLNCANHVAAGKLEHTNTCLENISLLAAPDGDTMQRIASHFTEALARRVLRSWRGLYRALhPPSVASTRPMPETLLARRHFFDLCPFVRLA 146
                     689*************************************************************5555555556********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +l+ NqaIlea+ege++vHi+D++  +s  +QW+aLlqaL +Rpegpp+lR+T+v++    +ke l   + rL+  Ae+l++pf+f++ v+ rl+
  XP_010922193.1 147 FLVSNQAILEAMEGERMVHIVDLGgaASDAAQWAALLQALRARPEGPPHLRLTVVHD----QKEFLDVAAMRLSADAERLDIPFQFHP-VHARLD 236
                     ***********************8667999***************************....9**************************.799*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrll.............................................................desvsle 221
                     +l++e+Lrvk+gEala+++vlqlh+ll                                                             +++++l+
  XP_010922193.1 237 NLDVEMLRVKTGEALAISSVLQLHTLLaaddeaaavaghqrktpspftknsnmshlhrivqmshpgtlgellekdpvnvyspsqdsasSSPLALT 331
                     ***********************************************************************************999874444443 PP

            GRAS 222 s..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                        +++++L  +++lsPk+++v+eqe++hn++ ++erf+eal++y+alfd+le+++pr seer+ vEr+l+g+ei+n+++cegaerrerhe+le+
  XP_010922193.1 332 PspKTESLLASLWGLSPKIMTVAEQESNHNGPMLMERFTEALNFYAALFDCLESTAPRMSEERARVERMLFGEEIKNIITCEGAERRERHEKLER 426
                     3457889**************************************************************************************** PP

            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     W +rle aGF+ vpls++a+ qa++ll+ ++ +gy+v ee+g+++++W+drpL+svSaW+
  XP_010922193.1 427 WVQRLELAGFGRVPLSYFAMLQARRLLQSYGIEGYKVREEKGCFFICWHDRPLFSVSAWK 486
                     ***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.56126466IPR005202Transcription factor GRAS
PfamPF035141.1E-13252486IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGGMMQDDGS SSVTSSSLQC FSLMSLSPAA QLISPPVTWL GEMKSDERGL YLIHLLLNCA  60
NHVAAGKLEH TNTCLENISL LAAPDGDTMQ RIASHFTEAL ARRVLRSWRG LYRALHPPSV  120
ASTRPMPETL LARRHFFDLC PFVRLAFLVS NQAILEAMEG ERMVHIVDLG GAASDAAQWA  180
ALLQALRARP EGPPHLRLTV VHDQKEFLDV AAMRLSADAE RLDIPFQFHP VHARLDNLDV  240
EMLRVKTGEA LAISSVLQLH TLLAADDEAA AVAGHQRKTP SPFTKNSNMS HLHRIVQMSH  300
PGTLGELLEK DPVNVYSPSQ DSASSSPLAL TPSPKTESLL ASLWGLSPKI MTVAEQESNH  360
NGPMLMERFT EALNFYAALF DCLESTAPRM SEERARVERM LFGEEIKNII TCEGAERRER  420
HEKLERWVQR LELAGFGRVP LSYFAMLQAR RLLQSYGIEG YKVREEKGCF FICWHDRPLF  480
SVSAWKFKRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-374448511378Protein SCARECROW
5b3h_A8e-374448510377Protein SCARECROW
5b3h_D8e-374448510377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922193.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2H3X0V50.0A0A2H3X0V5_PHODC; scarecrow-like protein 3
STRINGXP_008776639.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-176scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]