PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921930.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 472aa    MW: 52532.7 Da    PI: 6.2399
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921930.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.41.2e-120464681373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ Ll+cA+ +++g+  +a+alL ++s laspdgd+mqR+a+y++ AL+ rl+rs +++++ l p  + +   +e++aa++ f +++P+l +++
  XP_010921930.1  46 LIQFLLNCANLIAAGKPDQADALLVHISILASPDGDAMQRIASYLAVALSLRLLRSLPGVSRVLIPLCAVTFPLAEAVAARRHFLDLCPFLHIAF 140
                     5789************************************************************888888788********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      + N aIlea+e+e+++HiiD+++s ++QW++LlqaL++Rp+gpp+lRiTgv++    +ke l +t+  L+k Ae+l++pf+fn+ v++rl++l+
  XP_010921930.1 141 AVSNWAILEAMEEEKMIHIIDLNASDPTQWISLLQALSKRPGGPPHLRITGVHE----HKELLGHTATCLNKEAERLDIPFQFNP-VVSRLDNLD 230
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll..........................................................desvsles..erd 225
                     +e+Lrvk+gEala+n+vlqlh ll                                                                    + +
  XP_010921930.1 231 IESLRVKTGEALAINSVLQLHCLLatndegrssrimpmpaiqnpnttqlhgvnqatlrellerevingytpspdsalsppfaL-----VPapRME 320
                     *************************************************************************9998665431.....2233467 PP

            GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                     ++L ++++lsPkv+v++eqe++hns+   erf++al++y+alfd+le+++pr+s er+ vE+  lg+ei+n++aceg er+erhe+le+W +rle
  XP_010921930.1 321 SFLAVLWGLSPKVMVITEQESNHNSPMMNERFTKALYFYAALFDCLESTMPRNSVERMRVEKL-LGEEIKNIIACEGLERTERHEKLERWAQRLE 414
                     8************************************************************98.******************************* PP

            GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                      aGF+ v+ls++   qa +llr+++ + y++  +++g+++++W+d+pL+svSaW
  XP_010921930.1 415 LAGFSRVSLSYQGLLQAGMLLRNFNCESYKLLnSDNGCIMMYWQDQPLFSVSAW 468
                     *************************999998637899999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.00120448IPR005202Transcription factor GRAS
PfamPF035144.3E-11846468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAGTSQEEGS SSVQCFSGMS LSPSASGSPY LPWLRELKSD ERGLCLIQFL LNCANLIAAG  60
KPDQADALLV HISILASPDG DAMQRIASYL AVALSLRLLR SLPGVSRVLI PLCAVTFPLA  120
EAVAARRHFL DLCPFLHIAF AVSNWAILEA MEEEKMIHII DLNASDPTQW ISLLQALSKR  180
PGGPPHLRIT GVHEHKELLG HTATCLNKEA ERLDIPFQFN PVVSRLDNLD IESLRVKTGE  240
ALAINSVLQL HCLLATNDEG RSSRIMPMPA IQNPNTTQLH GVNQATLREL LEREVINGYT  300
PSPDSALSPP FALVPAPRME SFLAVLWGLS PKVMVITEQE SNHNSPMMNE RFTKALYFYA  360
ALFDCLESTM PRNSVERMRV EKLLGEEIKN IIACEGLERT ERHEKLERWA QRLELAGFSR  420
VSLSYQGLLQ AGMLLRNFNC ESYKLLNSDN GCIMMYWQDQ PLFSVSAWGC RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-37174686418Protein SHORT-ROOT
5b3h_E6e-37174686418Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921930.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-158SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2H3XR890.0A0A2H3XR89_PHODC; scarecrow-like protein 3
STRINGXP_008787590.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-145scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]