PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010921550.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 314aa MW: 35509.1 Da PI: 8.2888

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010921550.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.4e-55	5	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+ +yL +kv++ ++ + ++i+evd++k+ePw+Lp k+++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ XP_010921550.1 5 LPPGFRFHPTDEELIICYLSRKVSDFRFVT-KAISEVDLNKCEPWELPgKTINMGEKEWYFFSLRDRKYPTGLRTNRATDAGYWKTTGKDKEIFH 98 79***********************998.88***********889999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g vg+kktLvfykgrap+gekt Wvmheyrl XP_010921550.1 99 -SGVPVGMKKTLVFYKGRAPNGEKTGWVMHEYRL 131 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-63	3	152	IPR003441	NAC domain
PROSITE profile	PS51005	58.648	5	152	IPR003441	NAC domain
Pfam	PF02365	7.5E-28	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEVNLPPGFR FHPTDEELII CYLSRKVSDF RFVTKAISEV DLNKCEPWEL PGKTINMGEK 60 EWYFFSLRDR KYPTGLRTNR ATDAGYWKTT GKDKEIFHSG VPVGMKKTLV FYKGRAPNGE 120 KTGWVMHEYR LHAKFPYKST KEEWVVCRVF RRSSNGKKLQ EGTSSMPNLL GSSCNTTSTT 180 ELGEPNTSML GKLINSSSTL DAVLINKDDD NNSTDKMDMN FAKEPTNEIM QYDEWPSGLL 240 SSSFSTNPTI LKALQLDNKQ PREATDMATL NPFVAQGDAI YGVESSSSFP ASSSRGSDSM 300 QRRLFDQKSI WTGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-55	2	158	17	174	NAC domain-containing protein 19
3swm_B	1e-55	2	158	17	174	NAC domain-containing protein 19
3swm_C	1e-55	2	158	17	174	NAC domain-containing protein 19
3swm_D	1e-55	2	158	17	174	NAC domain-containing protein 19
3swp_A	1e-55	2	158	17	174	NAC domain-containing protein 19
3swp_B	1e-55	2	158	17	174	NAC domain-containing protein 19
3swp_C	1e-55	2	158	17	174	NAC domain-containing protein 19
3swp_D	1e-55	2	158	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019707917.1	0.0	protein CUP-SHAPED COTYLEDON 2 isoform X1
Swissprot	Q9FLJ2	1e-75	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2H3YIH8	1e-169	A0A2H3YIH8_PHODC; NAC domain-containing protein 79-like isoform X2
STRING	XP_008799244.1	1e-170	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-93	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]