PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921536.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 393aa    MW: 42819.3 Da    PI: 4.4785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921536.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l+++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_010921536.1 14 KGRWTAEEDDILIKYIAANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding53.84.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+e ++++++ lG++ W++Ia +++ gRt++++k++w+++l
   XP_010921536.1  67 RGNISKEEEETIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.31961IPR017930Myb domain
SuperFamilySSF466896.88E-2811108IPR009057Homeodomain-like
SMARTSM007172.0E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
CDDcd001671.81E-91661No hitNo description
PROSITE profilePS5129424.98562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-2565116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002493.0E-1567112IPR001005SANT/Myb domain
CDDcd001671.04E-1171112No hitNo description
PfamPF066401.1E-7130272IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDDILIKYIA ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SKEEEETIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRVDSIQ  120
KFVGDGAEVM TVDLSKLPGG GKRRGGRTSR PAMKKNTTNG ITTRREKNEK GVSPPTSSAQ  180
TQSNEGQSMI VDPDQNQDSC DTFEGPNQGA LGHNEDPDQN PASCVTSEGP NRGALGPNED  240
MVSGLLRPSP MESGLWGGSR EMEPMLFGAS EDSNVGWGSY DEERESGVMS SSEEREGGAL  300
ILHGDGDGGT MGLEEQGRGG GVIAQGEEEA GSAQVDKFMD WELGGIEAKL WDDAGEMWPW  360
QWDNENGELG LQGMDGCGYQ EELLDSWLLS DVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22121185110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921536.10.0transcription factor MYB111
TrEMBLA0A2H3XNH40.0A0A2H3XNH4_PHODC; myb-related protein P-like
STRINGXP_008786362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-72myb domain protein 111